-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_58

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for pasa_asmbl_46558.p1
Couldn't classify 5101, 5493
Sorry, prediction pasa_asmbl_46557.p1 fails validation.
(ATG)	 AG	5101-5493	CA	AGC
Valid prediction for snap_scaffold_58-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61111-T1
Valid prediction for Augustus_model.g40654.t1
Valid prediction for snap_scaffold_58-snap.1-T1
Valid prediction for GlimmerHMM_glimmerT_61112-T1
Valid prediction for GeneMark_model.106319_t
Valid prediction for GeneMark_model.106318_t
Valid prediction for HiQ_model.g40655.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for CodingQuarry_transcript_52417-T1
Valid prediction for snap_scaffold_58-snap.8-T1
Couldn't classify 2579, 3442
Sorry, prediction pasa_asmbl_46559.p1 fails validation.
(CCC)	 TA	2579-3442	CA	AAC
Valid prediction for Augustus_model.g40656.t1
Valid prediction for snap_scaffold_58-snap.7-T1
Valid prediction for snap_scaffold_58-snap.3-T1
Valid prediction for GlimmerHMM_glimmerT_61115-T1
Valid prediction for GlimmerHMM_glimmerT_61113-T1
Valid prediction for pasa_asmbl_46563.p1
Valid prediction for snap_scaffold_58-snap.5-T1
Valid prediction for GeneMark_model.106320_t
Valid prediction for GlimmerHMM_glimmerT_61114-T1
Valid prediction for snap_scaffold_58-snap.6-T1
Valid prediction for snap_scaffold_58-snap.4-T1
Valid prediction for Augustus_model.g40657.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25756
-exon list size: 68


building trellis

1.4    
2.9    
4.3    
5.7    
7.1    
8.6    
10.0    
11.4    
12.9    
14.3    
15.7    
17.1    
18.6    
20.0    
21.4    
22.9    
24.3    
25.7    
27.1    
28.6    
30.0    
31.4    
32.9    
34.3    
35.7    
37.1    
38.6    
40.0    
41.4    
42.9    
44.3    
45.7    
47.1    
48.6    
50.0    
51.4    
52.9    
54.3    
55.7    
57.1    
58.6    
60.0    
61.4    
62.9    
64.3    
65.7    
67.1    
68.6    
70.0    
71.4    
72.9    
74.3    
75.7    
77.1    
78.6    
80.0    
81.4    
82.9    
84.3    
85.7    
87.1    
88.6    
90.0    
91.4    
92.9    
94.3    
95.7    
97.1    
98.6    
-found 4 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 4 predictions persist after filtering for low support