-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_579

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41218.t1
Valid prediction for GeneMark_model.107977_t
Couldn't classify 5394, 5540
Sorry, prediction GlimmerHMM_glimmerT_62013-T1 fails validation.
(ATG)	 AA	339-549	GT	AGG
(CAG)	 AG	5394-5540	GT	AGG
-recovered GlimmerHMM_glimmerT_62013-T1, initial, 339, 549
-recovered GlimmerHMM_glimmerT_62013-T1, internal, 5394, 5540
Couldn't classify 404, 549
Sorry, prediction Augustus_model.g41217.t1 fails validation.
(GAC)	 AG	404-549	GT	AGG
(ATG)	 AG	1981-2030	TT	GAT
-recovered Augustus_model.g41217.t1, terminal, 1981, 2030
-recovered Augustus_model.g41217.t1, internal, 404, 549
Valid prediction for GeneMark_model.107974_t
Couldn't classify 404, 549
Sorry, prediction snap_scaffold_579-snap.1-T1 fails validation.
(GAC)	 AG	404-549	GT	AGG
(ATG)	 AG	1981-2030	TT	GAT
-recovered snap_scaffold_579-snap.1-T1, terminal, 1981, 2030
-recovered snap_scaffold_579-snap.1-T1, internal, 404, 549

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 266, 271
Sorry, prediction GeneMark_model.107978_t fails validation.
(ACA)	 AG	266-271	GT	AAG
(AGA)	 AG	297-335	GT	GAG
(AGG)	 AG	359-430	GT	GGG
(ACA)	 AG	453-492	GT	CAG
(GCC)	 AG	629-657	GT	CTG
(ATC)	 AG	802-985	CC	AAC
-recovered GeneMark_model.107978_t, terminal, 802, 985
-recovered GeneMark_model.107978_t, internal, 266, 271
-recovered GeneMark_model.107978_t, internal, 297, 335
-recovered GeneMark_model.107978_t, internal, 359, 430
-recovered GeneMark_model.107978_t, internal, 453, 492
-recovered GeneMark_model.107978_t, internal, 629, 657
Valid prediction for GeneMark_model.107976_t
Valid prediction for GeneMark_model.107975_t
Valid prediction for snap_scaffold_579-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5634
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support