-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_578

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107971_t
Valid prediction for GeneMark_model.107972_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1270, 1284
Sorry, prediction GeneMark_model.107973_t fails validation.
(TAT)	 AG	1270-1284	GT	GTG
(CGT)	 AG	1306-1340	GT	GAG
(TGA)	 AG	1523-1595	GT	GAG
(GGA)	 AG	1621-1674	GT	AGG
(GAA)	 AG	1726-1843	AC	GAA
-recovered GeneMark_model.107973_t, terminal, 1726, 1843
-recovered GeneMark_model.107973_t, internal, 1270, 1284
-recovered GeneMark_model.107973_t, internal, 1306, 1340
-recovered GeneMark_model.107973_t, internal, 1523, 1595
-recovered GeneMark_model.107973_t, internal, 1621, 1674
Couldn't classify 5450, 5455
Sorry, prediction GeneMark_model.107970_t fails validation.
(ATG)	 AG	4678-4683	GT	ATG
(GCT)	 AG	4855-5006	GT	AGG
(AGG)	 AG	5450-5455	GT	GAG
-recovered GeneMark_model.107970_t, initial, 4678, 4683
-recovered GeneMark_model.107970_t, internal, 4678, 4683
-recovered GeneMark_model.107970_t, internal, 4855, 5006
-recovered GeneMark_model.107970_t, internal, 5450, 5455
Valid prediction for GlimmerHMM_glimmerT_62012-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5645
-exon list size: 29


building trellis

3.2    
6.5    
9.7    
12.9    
16.1    
19.4    
22.6    
25.8    
29.0    
32.3    
35.5    
38.7    
41.9    
45.2    
48.4    
51.6    
54.8    
58.1    
61.3    
64.5    
67.7    
71.0    
74.2    
77.4    
80.6    
83.9    
87.1    
90.3    
93.5    
96.8    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support