-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_577

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 936, 1022
Sorry, prediction snap_scaffold_577-snap.1-T1 fails validation.
(GTG)	 AG	936-1022	GT	AAG
(TCA)	 AG	3792-4143	GT	GGG
(ATG)	 AG	4207-4261	GT	AGG
(AGC)	 AG	4716-5148	CG	AAC
-recovered snap_scaffold_577-snap.1-T1, initial, 4207, 4261
-recovered snap_scaffold_577-snap.1-T1, terminal, 4716, 5148
-recovered snap_scaffold_577-snap.1-T1, internal, 936, 1022
-recovered snap_scaffold_577-snap.1-T1, internal, 3792, 4143
-recovered snap_scaffold_577-snap.1-T1, internal, 4207, 4261

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 185, 1842
Sorry, prediction GeneMark_model.107969_t fails validation.
(CAG)	 AG	185-1842	GT	GAG
(GAG)	 AG	1882-1932	TT	GAT
-recovered GeneMark_model.107969_t, terminal, 1882, 1932
-recovered GeneMark_model.107969_t, internal, 185, 1842
Couldn't classify 185, 854
Sorry, prediction Augustus_model.g41216.t1 fails validation.
(CAG)	 AG	185-854	GT	CGG
(CTT)	 AG	1395-1857	CT	GAC
-recovered Augustus_model.g41216.t1, terminal, 1395, 1857
-recovered Augustus_model.g41216.t1, internal, 185, 854
Couldn't classify 5535, 5634
Sorry, prediction GeneMark_model.107968_t fails validation.
(ATG)	 AG	3913-3920	GT	AAG
(GAA)	 AG	4517-4552	GT	GGG
(AGG)	 AG	4585-4619	GT	AGG
(CTC)	 AG	5435-5444	GT	AGG
(GGA)	 AG	5535-5634	GC	AGG
-recovered GeneMark_model.107968_t, initial, 3913, 3920
-recovered GeneMark_model.107968_t, internal, 3913, 3920
-recovered GeneMark_model.107968_t, internal, 4517, 4552
-recovered GeneMark_model.107968_t, internal, 4585, 4619
-recovered GeneMark_model.107968_t, internal, 5435, 5444
-recovered GeneMark_model.107968_t, internal, 5535, 5634
Valid prediction for GlimmerHMM_glimmerT_62011-T1
add_exon() Sorry, GlimmerHMM_glimmerT_62011-T1 185-1857-terminal-1 is invalid.
Couldn't classify 185, 1842
Sorry, prediction snap_scaffold_577-snap.2-T1 fails validation.
(CAG)	 AG	185-1842	GT	GAG
-recovered snap_scaffold_577-snap.2-T1, internal, 185, 1842

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5148, rend_intergenic: 3807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5648
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5148, rend_intergenic: 3807  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support