-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_576

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_576-snap.2-T1
Valid prediction for GeneMark_model.107966_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_576-snap.1-T1
Valid prediction for Augustus_model.g41215.t1
Couldn't classify 4287, 4450
Couldn't classify 5107, 5157
Sorry, prediction pasa_asmbl_46552.p1 fails validation.
(CAC)	 AC	4287-4450	GT	CGG
(TAT)	 AG	4552-4630	GT	AGG
(TCT)	 AG	4711-4869	GT	CGG
(GAG)	 AG	5107-5157	GC	CTG
-recovered pasa_asmbl_46552.p1, internal, 4552, 4630
-recovered pasa_asmbl_46552.p1, internal, 4711, 4869
-recovered pasa_asmbl_46552.p1, internal, 5107, 5157
Couldn't classify 578, 794
Sorry, prediction GeneMark_model.107967_t fails validation.
(ATC)	 AG	578-794	GT	AGG
(CAG)	 AG	818-834	AG	AGA
-recovered GeneMark_model.107967_t, terminal, 818, 834
-recovered GeneMark_model.107967_t, internal, 578, 794
Couldn't classify 578, 794
Sorry, prediction GlimmerHMM_glimmerT_62010-T1 fails validation.
(ATC)	 AG	578-794	GT	AGG
(CAG)	 AG	1151-1273	GT	AGG
(ATA)	 AG	1413-1576	GT	AGG
(CAT)	 AG	1675-1751	GT	AGG
(GTG)	 AG	2927-3151	GT	CGG
(GAA)	 AG	4283-4379	GT	GGG
(TCT)	 AG	4711-4869	GT	CGG
(GAG)	 AG	5107-5469	TG	AGT
-recovered GlimmerHMM_glimmerT_62010-T1, terminal, 5107, 5469
-recovered GlimmerHMM_glimmerT_62010-T1, internal, 578, 794
-recovered GlimmerHMM_glimmerT_62010-T1, internal, 1151, 1273
-recovered GlimmerHMM_glimmerT_62010-T1, internal, 1413, 1576
-recovered GlimmerHMM_glimmerT_62010-T1, internal, 1675, 1751
-recovered GlimmerHMM_glimmerT_62010-T1, internal, 2927, 3151
-recovered GlimmerHMM_glimmerT_62010-T1, internal, 4283, 4379
-recovered GlimmerHMM_glimmerT_62010-T1, internal, 4711, 4869
Couldn't classify 773, 794
Couldn't classify 1675, 1746
Sorry, prediction pasa_asmbl_46553.p1 fails validation.
(TCC)	 CC	773-794	GT	AGG
(CAG)	 AG	1151-1273	GT	AGG
(ATA)	 AG	1413-1576	GT	AGG
(CAT)	 AG	1675-1746	TA	CCT
-recovered pasa_asmbl_46553.p1, internal, 1151, 1273
-recovered pasa_asmbl_46553.p1, internal, 1413, 1576
Valid prediction for GeneMark_model.107965_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5276, rend_intergenic: 1738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5681
-exon list size: 42


building trellis

2.3    
4.5    
6.8    
9.1    
11.4    
13.6    
15.9    
18.2    
20.5    
22.7    
25.0    
27.3    
29.5    
31.8    
34.1    
36.4    
38.6    
40.9    
43.2    
45.5    
47.7    
50.0    
52.3    
54.5    
56.8    
59.1    
61.4    
63.6    
65.9    
68.2    
70.5    
72.7    
75.0    
77.3    
79.5    
81.8    
84.1    
86.4    
88.6    
90.9    
93.2    
95.5    
97.7    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5276, rend_intergenic: 1738  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support