-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_575

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 879, 1016
Sorry, prediction GeneMark_model.107962_t fails validation.
(GAG)	 AG	879-1016	GT	CGG
(ACC)	 AG	1213-1243	GT	GGG
(GGG)	 AG	2155-2174	GT	GAG
(GGA)	 AG	2589-2661	GA	AGG
-recovered GeneMark_model.107962_t, terminal, 2589, 2661
-recovered GeneMark_model.107962_t, internal, 879, 1016
-recovered GeneMark_model.107962_t, internal, 1213, 1243
-recovered GeneMark_model.107962_t, internal, 2155, 2174
Couldn't classify 767, 1016
Couldn't classify 5539, 5593
Sorry, prediction snap_scaffold_575-snap.1-T1 fails validation.
(GCG)	 AG	767-1016	GT	CGG
(GTT)	 AG	2053-2215	GT	GAG
(CGT)	 AG	3042-3758	GT	ATG
(GAC)	 AG	3834-3856	GT	CGG
(GGT)	 AG	4478-4649	GT	CTG
(AGC)	 AG	5539-5593	GT	AGG
-recovered snap_scaffold_575-snap.1-T1, internal, 767, 1016
-recovered snap_scaffold_575-snap.1-T1, internal, 2053, 2215
-recovered snap_scaffold_575-snap.1-T1, internal, 3042, 3758
-recovered snap_scaffold_575-snap.1-T1, internal, 3834, 3856
-recovered snap_scaffold_575-snap.1-T1, internal, 4478, 4649
-recovered snap_scaffold_575-snap.1-T1, internal, 5539, 5593
Valid prediction for GeneMark_model.107963_t
Valid prediction for GlimmerHMM_glimmerT_62009-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 131, 146
Sorry, prediction GeneMark_model.107964_t fails validation.
(TGC)	 AG	131-146	GT	AGG
(ATG)	 AG	175-231	GT	GAG
(AGA)	 AG	685-723	GT	ATG
(GGA)	 AG	883-948	GT	CAG
(GCA)	 AG	1049-1589	AC	AGA
-recovered GeneMark_model.107964_t, initial, 175, 231
-recovered GeneMark_model.107964_t, terminal, 1049, 1589
-recovered GeneMark_model.107964_t, internal, 131, 146
-recovered GeneMark_model.107964_t, internal, 175, 231
-recovered GeneMark_model.107964_t, internal, 685, 723
-recovered GeneMark_model.107964_t, internal, 883, 948
Couldn't classify 131, 240
Sorry, prediction snap_scaffold_575-snap.2-T1 fails validation.
(TGC)	 AG	131-240	GT	AGG
(CGT)	 AG	852-1327	GT	AGG
(CTT)	 AG	3503-3665	CA	GAC
-recovered snap_scaffold_575-snap.2-T1, terminal, 3503, 3665
-recovered snap_scaffold_575-snap.2-T1, internal, 131, 240
-recovered snap_scaffold_575-snap.2-T1, internal, 852, 1327
Valid prediction for GlimmerHMM_glimmerT_62008-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5593, rend_intergenic: 2041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5705
-exon list size: 62


building trellis

1.6    
3.1    
4.7    
6.2    
7.8    
9.4    
10.9    
12.5    
14.1    
15.6    
17.2    
18.8    
20.3    
21.9    
23.4    
25.0    
26.6    
28.1    
29.7    
31.2    
32.8    
34.4    
35.9    
37.5    
39.1    
40.6    
42.2    
43.8    
45.3    
46.9    
48.4    
50.0    
51.6    
53.1    
54.7    
56.2    
57.8    
59.4    
60.9    
62.5    
64.1    
65.6    
67.2    
68.8    
70.3    
71.9    
73.4    
75.0    
76.6    
78.1    
79.7    
81.2    
82.8    
84.4    
85.9    
87.5    
89.1    
90.6    
92.2    
93.8    
95.3    
96.9    
98.4    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 5593, rend_intergenic: 2041  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support