-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_573

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2885, 3220
Sorry, prediction pasa_asmbl_46548.p1 fails validation.
(GAC)	 CA	2885-3220	CG	AGC
Couldn't classify 1581, 1667
Sorry, prediction GlimmerHMM_glimmerT_62006-T1 fails validation.
(TTC)	 AG	1581-1667	GT	AAG
(ATG)	 AG	1991-2110	GT	AGG
(GAG)	 AG	2201-2338	GT	AGG
(GGC)	 AG	2447-2498	GT	AGG
(ATG)	 AG	2865-3397	AA	AAA
-recovered GlimmerHMM_glimmerT_62006-T1, initial, 1991, 2110
-recovered GlimmerHMM_glimmerT_62006-T1, terminal, 2865, 3397
-recovered GlimmerHMM_glimmerT_62006-T1, internal, 1581, 1667
-recovered GlimmerHMM_glimmerT_62006-T1, internal, 1991, 2110
-recovered GlimmerHMM_glimmerT_62006-T1, internal, 2201, 2338
-recovered GlimmerHMM_glimmerT_62006-T1, internal, 2447, 2498
Valid prediction for GeneMark_model.107959_t
Valid prediction for snap_scaffold_573-snap.1-T1
Valid prediction for Augustus_model.g41213.t1
Couldn't classify 1578, 1694
Couldn't classify 2447, 2500
Sorry, prediction pasa_asmbl_46550.p1 fails validation.
(CAG)	 CA	1578-1694	GT	AGG
(ATG)	 AG	1991-2110	GT	AGG
(GAG)	 AG	2201-2338	GT	AGG
(GGC)	 AG	2447-2500	GC	GTG
-recovered pasa_asmbl_46550.p1, initial, 1991, 2110
-recovered pasa_asmbl_46550.p1, internal, 1991, 2110
-recovered pasa_asmbl_46550.p1, internal, 2201, 2338
-recovered pasa_asmbl_46550.p1, internal, 2447, 2500

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5722
-exon list size: 21


building trellis

4.3    
8.7    
13.0    
17.4    
21.7    
26.1    
30.4    
34.8    
39.1    
43.5    
47.8    
52.2    
56.5    
60.9    
65.2    
69.6    
73.9    
78.3    
82.6    
87.0    
91.3    
95.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support