-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_572

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_572-snap.1-T1
Couldn't classify 34, 63
Sorry, prediction GeneMark_model.107958_t fails validation.
(GCG)	 AG	34-63	GT	GGG
(GCT)	 AG	1937-1975	GT	GAG
(GCT)	 AG	2028-2066	GT	GAG
(GCT)	 AG	2221-2255	GT	AGG
(TGA)	 AG	2397-2418	GT	GAG
(GCT)	 AG	2539-2573	GT	AGG
(GCT)	 AG	2709-2743	GT	AGG
(GCT)	 AG	2879-2887	TG	GAT
add_exon() Sorry, GeneMark_model.107958_t 1937-1975-terminal-1 is invalid.
-recovered GeneMark_model.107958_t, terminal, 1937, 1975
add_exon() Sorry, GeneMark_model.107958_t 2028-2066-terminal-1 is invalid.
-recovered GeneMark_model.107958_t, terminal, 2028, 2066
-recovered GeneMark_model.107958_t, terminal, 2397, 2418
-recovered GeneMark_model.107958_t, terminal, 2879, 2887
-recovered GeneMark_model.107958_t, internal, 34, 63
-recovered GeneMark_model.107958_t, internal, 1937, 1975
-recovered GeneMark_model.107958_t, internal, 2028, 2066
-recovered GeneMark_model.107958_t, internal, 2221, 2255
-recovered GeneMark_model.107958_t, internal, 2397, 2418
-recovered GeneMark_model.107958_t, internal, 2539, 2573
-recovered GeneMark_model.107958_t, internal, 2709, 2743

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_62005-T1
Valid prediction for snap_scaffold_572-snap.2-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5294, rend_intergenic: 1672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5725
-exon list size: 20


building trellis

4.5    
9.1    
13.6    
18.2    
22.7    
27.3    
31.8    
36.4    
40.9    
45.5    
50.0    
54.5    
59.1    
63.6    
68.2    
72.7    
77.3    
81.8    
86.4    
90.9    
95.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5294, rend_intergenic: 1672  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support