-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_570

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107953_t
Couldn't classify 1055, 1100
Sorry, prediction snap_scaffold_570-snap.2-T1 fails validation.
(AGT)	 AG	1055-1100	GT	AGG
(GAA)	 AG	1483-1581	GT	CGG
(GAC)	 AG	2780-3049	GT	AGG
(GAG)	 AG	4521-4665	AG	AGA
-recovered snap_scaffold_570-snap.2-T1, terminal, 4521, 4665
-recovered snap_scaffold_570-snap.2-T1, internal, 1055, 1100
-recovered snap_scaffold_570-snap.2-T1, internal, 1483, 1581
-recovered snap_scaffold_570-snap.2-T1, internal, 2780, 3049
Valid prediction for snap_scaffold_570-snap.3-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 1141, 1262
Sorry, prediction snap_scaffold_570-snap.1-T1 fails validation.
(CCA)	 AG	1141-1262	GT	AGG
(GCA)	 AG	2755-3006	GT	TGG
(TGT)	 AG	4048-4253	GT	AGG
(CCG)	 AG	4658-4815	GT	AGG
(CTG)	 AG	5096-5181	GT	AGG
add_exon() Sorry, snap_scaffold_570-snap.1-T1 5096-5181-terminal-2 is invalid.
-recovered snap_scaffold_570-snap.1-T1, terminal, 5096, 5181
-recovered snap_scaffold_570-snap.1-T1, internal, 1141, 1262
-recovered snap_scaffold_570-snap.1-T1, internal, 2755, 3006
-recovered snap_scaffold_570-snap.1-T1, internal, 4048, 4253
-recovered snap_scaffold_570-snap.1-T1, internal, 4658, 4815
-recovered snap_scaffold_570-snap.1-T1, internal, 5096, 5181
Valid prediction for GeneMark_model.107951_t
Valid prediction for Augustus_model.g41211.t1
Valid prediction for GeneMark_model.107952_t
Couldn't classify 1141, 1262
Sorry, prediction GlimmerHMM_glimmerT_62003-T1 fails validation.
(CCA)	 AG	1141-1262	GT	AGG
(GCA)	 AG	2755-3006	GT	TGG
(TGT)	 AG	4048-4253	GT	AGG
(CCG)	 AG	4658-4828	CC	GAC
-recovered GlimmerHMM_glimmerT_62003-T1, terminal, 4658, 4828
-recovered GlimmerHMM_glimmerT_62003-T1, internal, 1141, 1262
-recovered GlimmerHMM_glimmerT_62003-T1, internal, 2755, 3006
-recovered GlimmerHMM_glimmerT_62003-T1, internal, 4048, 4253

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4611, rend_intergenic: 1055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5751
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4611, rend_intergenic: 1055  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support