-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_568

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 508, 537
Sorry, prediction GeneMark_model.107949_t fails validation.
(GAG)	 AG	508-537	GT	AGG
(GAG)	 AG	559-709	GT	AGG
(GCC)	 AG	961-972	GT	AGG
(GGG)	 AG	1376-1383	GT	CAG
(AGG)	 AG	4078-4086	GT	AGG
(AAG)	 AG	4107-4121	GT	CTG
(GAG)	 AG	4290-4298	GT	AAG
(GGG)	 AG	4322-4428	GT	CAG
(ACA)	 AG	4455-5245	GT	AAG
-recovered GeneMark_model.107949_t, terminal, 4455, 5245
-recovered GeneMark_model.107949_t, internal, 508, 537
-recovered GeneMark_model.107949_t, internal, 559, 709
-recovered GeneMark_model.107949_t, internal, 961, 972
-recovered GeneMark_model.107949_t, internal, 1376, 1383
-recovered GeneMark_model.107949_t, internal, 4078, 4086
-recovered GeneMark_model.107949_t, internal, 4107, 4121
-recovered GeneMark_model.107949_t, internal, 4290, 4298
-recovered GeneMark_model.107949_t, internal, 4322, 4428
-recovered GeneMark_model.107949_t, internal, 4455, 5245
Valid prediction for GlimmerHMM_glimmerT_62001-T1
Couldn't classify 485, 697
Sorry, prediction snap_scaffold_568-snap.2-T1 fails validation.
(GAG)	 AG	485-697	GT	GAG
(GGG)	 AG	1376-1425	TT	GAT
-recovered snap_scaffold_568-snap.2-T1, terminal, 1376, 1425
-recovered snap_scaffold_568-snap.2-T1, internal, 485, 697
Valid prediction for snap_scaffold_568-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5764
-exon list size: 30


building trellis

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43.8    
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71.9    
75.0    
78.1    
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84.4    
87.5    
90.6    
93.8    
96.9    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support