-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_564

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5683, 5800
Sorry, prediction snap_scaffold_564-snap.2-T1 fails validation.
(ATG)	 GG	2514-2534	GT	AGG
(CCT)	 AG	3298-3357	GT	AGG
(AAG)	 AG	5010-5115	GT	CGG
(AAG)	 AG	5683-5800	GT	GGG
-recovered snap_scaffold_564-snap.2-T1, initial, 2514, 2534
-recovered snap_scaffold_564-snap.2-T1, internal, 3298, 3357
-recovered snap_scaffold_564-snap.2-T1, internal, 5010, 5115
-recovered snap_scaffold_564-snap.2-T1, internal, 5683, 5800
Couldn't classify 5727, 5800
Sorry, prediction GeneMark_model.107940_t fails validation.
(ATG)	 AG	5055-5126	GT	AGG
(ACC)	 AG	5434-5540	GC	AGG
(AAT)	 AG	5565-5582	GT	GAG
(AAG)	 AG	5697-5702	GT	GGG
(GAG)	 AG	5727-5800	GT	GGG
-recovered GeneMark_model.107940_t, initial, 5055, 5126
-recovered GeneMark_model.107940_t, internal, 5055, 5126
-recovered GeneMark_model.107940_t, internal, 5434, 5540
-recovered GeneMark_model.107940_t, internal, 5565, 5582
-recovered GeneMark_model.107940_t, internal, 5697, 5702
-recovered GeneMark_model.107940_t, internal, 5727, 5800
Valid prediction for GlimmerHMM_glimmerT_61995-T1
Valid prediction for GeneMark_model.107939_t
Valid prediction for GlimmerHMM_glimmerT_61994-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_564-snap.1-T1
Valid prediction for Augustus_model.g41207.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4849, rend_intergenic: 2514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5826
-exon list size: 49


building trellis

2.0    
3.9    
5.9    
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11.8    
13.7    
15.7    
17.6    
19.6    
21.6    
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25.5    
27.5    
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31.4    
33.3    
35.3    
37.3    
39.2    
41.2    
43.1    
45.1    
47.1    
49.0    
51.0    
52.9    
54.9    
56.9    
58.8    
60.8    
62.7    
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66.7    
68.6    
70.6    
72.5    
74.5    
76.5    
78.4    
80.4    
82.4    
84.3    
86.3    
88.2    
90.2    
92.2    
94.1    
96.1    
98.0    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4849, rend_intergenic: 2514  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support