-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_563

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3670, 3675
Sorry, prediction GeneMark_model.107938_t fails validation.
(ATG)	 AC	2817-2929	GT	GGG
(GGT)	 AG	2953-2979	GT	GGG
(AGG)	 AG	3012-3074	GT	GAG
(GAG)	 AG	3097-3108	GT	ATG
(GGG)	 AG	3132-3179	GT	GGG
(GGG)	 AG	3206-3265	GT	GGG
(GAG)	 AG	3288-3326	GT	ATG
(AGT)	 AG	3365-3415	GT	GAG
(GGT)	 AG	3443-3490	GT	GAG
(GAG)	 AG	3516-3536	GT	GGG
(GAG)	 AG	3561-3566	GT	AGG
(GGG)	 AG	3592-3645	GT	GGG
(GAG)	 AG	3670-3675	GT	AGG
-recovered GeneMark_model.107938_t, initial, 2817, 2929
-recovered GeneMark_model.107938_t, terminal, 3365, 3415
-recovered GeneMark_model.107938_t, internal, 2953, 2979
-recovered GeneMark_model.107938_t, internal, 3012, 3074
-recovered GeneMark_model.107938_t, internal, 3097, 3108
-recovered GeneMark_model.107938_t, internal, 3132, 3179
-recovered GeneMark_model.107938_t, internal, 3206, 3265
-recovered GeneMark_model.107938_t, internal, 3288, 3326
-recovered GeneMark_model.107938_t, internal, 3365, 3415
-recovered GeneMark_model.107938_t, internal, 3443, 3490
-recovered GeneMark_model.107938_t, internal, 3516, 3536
-recovered GeneMark_model.107938_t, internal, 3561, 3566
-recovered GeneMark_model.107938_t, internal, 3592, 3645
-recovered GeneMark_model.107938_t, internal, 3670, 3675
Couldn't classify 749, 798
Sorry, prediction GeneMark_model.107936_t fails validation.
(GTC)	 AG	749-798	GT	TGG
(GGG)	 AG	821-847	GT	GAG
(GGG)	 AG	874-927	GT	GAG
(TAG)	 AG	958-972	GT	GAG
(GGG)	 AG	994-1066	CT	AGC
-recovered GeneMark_model.107936_t, terminal, 994, 1066
-recovered GeneMark_model.107936_t, internal, 749, 798
-recovered GeneMark_model.107936_t, internal, 821, 847
-recovered GeneMark_model.107936_t, internal, 874, 927
-recovered GeneMark_model.107936_t, internal, 958, 972
Couldn't classify 286, 378
Couldn't classify 3143, 3443
Sorry, prediction snap_scaffold_563-snap.1-T1 fails validation.
(AAG)	 AG	286-378	GT	CAG
(AAA)	 AG	1917-1969	GT	AGG
(GAG)	 AG	3143-3443	GT	GGG
-recovered snap_scaffold_563-snap.1-T1, internal, 286, 378
-recovered snap_scaffold_563-snap.1-T1, internal, 1917, 1969
-recovered snap_scaffold_563-snap.1-T1, internal, 3143, 3443

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107937_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5829
-exon list size: 53


building trellis

1.8    
3.6    
5.5    
7.3    
9.1    
10.9    
12.7    
14.5    
16.4    
18.2    
20.0    
21.8    
23.6    
25.5    
27.3    
29.1    
30.9    
32.7    
34.5    
36.4    
38.2    
40.0    
41.8    
43.6    
45.5    
47.3    
49.1    
50.9    
52.7    
54.5    
56.4    
58.2    
60.0    
61.8    
63.6    
65.5    
67.3    
69.1    
70.9    
72.7    
74.5    
76.4    
78.2    
80.0    
81.8    
83.6    
85.5    
87.3    
89.1    
90.9    
92.7    
94.5    
96.4    
98.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support