-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_562

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_562-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61992-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61993-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61993-T1 1377-1618-terminal-1 is invalid.
Couldn't classify 944, 1042
Sorry, prediction GeneMark_model.107935_t fails validation.
(TGG)	 AG	944-1042	GT	CTG
(TTA)	 AG	1195-1618	TA	GAT
-recovered GeneMark_model.107935_t, terminal, 1195, 1618
-recovered GeneMark_model.107935_t, internal, 944, 1042
Valid prediction for snap_scaffold_562-snap.1-T1
Couldn't classify 5686, 5821
Sorry, prediction GeneMark_model.107934_t fails validation.
(ATG)	 CG	1828-2127	GT	GAG
(CGA)	 AG	5114-5154	GT	AGG
(CCT)	 AG	5686-5821	GC	CCG
-recovered GeneMark_model.107934_t, initial, 1828, 2127
-recovered GeneMark_model.107934_t, internal, 5114, 5154
-recovered GeneMark_model.107934_t, internal, 5686, 5821
Valid prediction for Augustus_model.g41206.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5834
-exon list size: 14


building trellis

6.2    
12.5    
18.8    
25.0    
31.2    
37.5    
43.8    
50.0    
56.2    
62.5    
68.8    
75.0    
81.2    
87.5    
93.8    
-found 2 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support