-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_561

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 3278, 3605
Couldn't classify 3943, 4023
Sorry, prediction snap_scaffold_561-snap.1-T1 fails validation.
(GGC)	 AG	3278-3605	GT	AGG
(GCA)	 AG	3943-4023	GT	GCG
-recovered snap_scaffold_561-snap.1-T1, internal, 3278, 3605
-recovered snap_scaffold_561-snap.1-T1, internal, 3943, 4023
Couldn't classify 33, 47
Sorry, prediction GeneMark_model.107933_t fails validation.
(GGG)	 AG	33-47	GT	GGG
(TTC)	 AG	665-682	GT	CTG
(GGC)	 AG	3278-3301	GT	GTG
(GGC)	 AG	3324-3347	GT	GTG
(GGC)	 AG	3370-3393	GT	GTG
(GGC)	 AG	3416-3523	GT	CAG
(GGC)	 AG	3546-3605	GT	AGG
(ACA)	 AG	3814-3910	GG	GAG
-recovered GeneMark_model.107933_t, terminal, 3814, 3910
-recovered GeneMark_model.107933_t, internal, 33, 47
-recovered GeneMark_model.107933_t, internal, 665, 682
-recovered GeneMark_model.107933_t, internal, 3278, 3301
-recovered GeneMark_model.107933_t, internal, 3324, 3347
-recovered GeneMark_model.107933_t, internal, 3370, 3393
-recovered GeneMark_model.107933_t, internal, 3416, 3523
-recovered GeneMark_model.107933_t, internal, 3546, 3605

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5837
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support