-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_560

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 77, 220
Sorry, prediction GeneMark_model.107931_t fails validation.
(GCC)	 AG	77-220	GT	ACG
(GCC)	 AG	605-763	GT	GAG
(AGA)	 AG	816-892	GT	TGG
(ATG)	 AG	978-1003	GG	AGG
-recovered GeneMark_model.107931_t, terminal, 978, 1003
-recovered GeneMark_model.107931_t, internal, 77, 220
-recovered GeneMark_model.107931_t, internal, 605, 763
-recovered GeneMark_model.107931_t, internal, 816, 892
Valid prediction for snap_scaffold_560-snap.2-T1
Couldn't classify 5037, 5325
Sorry, prediction GeneMark_model.107932_t fails validation.
(ATG)	 GG	3709-3737	GT	TCG
(AGA)	 AG	3890-3896	GT	AGG
(GAG)	 AG	4347-4816	GT	GCG
(AAG)	 AG	5037-5325	GT	AGG
-recovered GeneMark_model.107932_t, initial, 3709, 3737
-recovered GeneMark_model.107932_t, internal, 3890, 3896
-recovered GeneMark_model.107932_t, internal, 4347, 4816
-recovered GeneMark_model.107932_t, internal, 5037, 5325

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5643, 5759
Sorry, prediction Augustus_model.g41205.t1 fails validation.
(ATG)	 GG	2281-2299	GT	AGG
(GTG)	 AG	4844-4967	GT	AGG
(TCC)	 AG	5103-5259	GT	TGG
(GAT)	 AG	5643-5759	GT	GTG
-recovered Augustus_model.g41205.t1, initial, 2281, 2299
-recovered Augustus_model.g41205.t1, internal, 4844, 4967
-recovered Augustus_model.g41205.t1, internal, 5103, 5259
-recovered Augustus_model.g41205.t1, internal, 5643, 5759
Couldn't classify 1392, 1517
Couldn't classify 5643, 5699
Sorry, prediction snap_scaffold_560-snap.1-T1 fails validation.
(GAG)	 AG	1392-1517	GT	ATG
(GGC)	 AG	1961-1982	GT	AGG
(GTG)	 AG	4844-4967	GT	AGG
(TCC)	 AG	5103-5259	GT	TGG
(GAT)	 AG	5643-5699	GT	GGG
-recovered snap_scaffold_560-snap.1-T1, internal, 1392, 1517
-recovered snap_scaffold_560-snap.1-T1, internal, 1961, 1982
-recovered snap_scaffold_560-snap.1-T1, internal, 4844, 4967
-recovered snap_scaffold_560-snap.1-T1, internal, 5103, 5259
-recovered snap_scaffold_560-snap.1-T1, internal, 5643, 5699
Couldn't classify 4951, 5250
Sorry, prediction pasa_asmbl_46530.p1 fails validation.
(CAG)	 AC	4951-5250	CA	TGC
Valid prediction for GlimmerHMM_glimmerT_61991-T1
Valid prediction for GlimmerHMM_glimmerT_61990-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4451, rend_intergenic: 506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5842
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4451, rend_intergenic: 506  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support