-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_56

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for snap_scaffold_56-snap.1-T1
Valid prediction for GeneMark_model.106309_t
Valid prediction for GlimmerHMM_glimmerT_61097-T1
Valid prediction for GlimmerHMM_glimmerT_61099-T1
Valid prediction for GlimmerHMM_glimmerT_61100-T1
Valid prediction for Augustus_model.g40645.t1
Valid prediction for GeneMark_model.106307_t
Valid prediction for GeneMark_model.106310_t
Valid prediction for Augustus_model.g40647.t1
Valid prediction for snap_scaffold_56-snap.3-T1
Couldn't classify 5326, 5557
Couldn't classify 5758, 5900
Sorry, prediction pasa_asmbl_46525.p1 fails validation.
(GAA)	 AT	5326-5557	GT	TGG
(GCA)	 AG	5758-5900	GG	AAG
Valid prediction for GlimmerHMM_glimmerT_61101-T1
Valid prediction for snap_scaffold_56-snap.5-T1
Valid prediction for Augustus_model.g40648.t1
Couldn't classify 15057, 15276
Couldn't classify 15481, 16085
Sorry, prediction pasa_asmbl_46528.p1 fails validation.
(TCC)	 GG	15057-15276	GT	AAG
(AAT)	 AG	15481-16085	TT	GGT
Couldn't classify 14122, 14421
Sorry, prediction pasa_asmbl_46527.p1 fails validation.
(GTG)	 CA	14122-14421	TT	AGT
Valid prediction for snap_scaffold_56-snap.4-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61096-T1
Valid prediction for GlimmerHMM_glimmerT_61098-T1
Valid prediction for GlimmerHMM_glimmerT_61095-T1
Valid prediction for Augustus_model.g40646.t1
Valid prediction for Augustus_model.g40644.t1
Valid prediction for snap_scaffold_56-snap.2-T1
Valid prediction for GeneMark_model.106308_t
Valid prediction for GeneMark_model.106306_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 25895
-exon list size: 76


building trellis

1.3    
2.6    
3.8    
5.1    
6.4    
7.7    
9.0    
10.3    
11.5    
12.8    
14.1    
15.4    
16.7    
17.9    
19.2    
20.5    
21.8    
23.1    
24.4    
25.6    
26.9    
28.2    
29.5    
30.8    
32.1    
33.3    
34.6    
35.9    
37.2    
38.5    
39.7    
41.0    
42.3    
43.6    
44.9    
46.2    
47.4    
48.7    
50.0    
51.3    
52.6    
53.8    
55.1    
56.4    
57.7    
59.0    
60.3    
61.5    
62.8    
64.1    
65.4    
66.7    
67.9    
69.2    
70.5    
71.8    
73.1    
74.4    
75.6    
76.9    
78.2    
79.5    
80.8    
82.1    
83.3    
84.6    
85.9    
87.2    
88.5    
89.7    
91.0    
92.3    
93.6    
94.9    
96.2    
97.4    
98.7    
-found 7 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 7 predictions persist after filtering for low support