-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_555

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 133, 227
Sorry, prediction snap_scaffold_555-snap.2-T1 fails validation.
(CTG)	 AG	133-227	GT	GGG
(TCG)	 AG	362-491	GT	TCG
(GAA)	 AG	3328-3430	GT	CGG
(GGT)	 AG	5286-5355	GG	AAG
-recovered snap_scaffold_555-snap.2-T1, terminal, 5286, 5355
-recovered snap_scaffold_555-snap.2-T1, internal, 133, 227
-recovered snap_scaffold_555-snap.2-T1, internal, 362, 491
-recovered snap_scaffold_555-snap.2-T1, internal, 3328, 3430
Valid prediction for GeneMark_model.107925_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 151, 184
Sorry, prediction GlimmerHMM_glimmerT_61984-T1 fails validation.
(ATT)	 AG	151-184	GT	CAG
(GTG)	 AG	2417-2616	CA	GAC
-recovered GlimmerHMM_glimmerT_61984-T1, terminal, 2417, 2616
-recovered GlimmerHMM_glimmerT_61984-T1, internal, 151, 184
Couldn't classify 5857, 5878
Sorry, prediction GeneMark_model.107924_t fails validation.
(ATG)	 CC	2736-2869	GT	GGG
(AGA)	 AG	2893-2967	GT	GTG
(AGT)	 AG	2989-3021	GT	AGG
(AAA)	 AG	4700-4789	GC	GAG
(ACA)	 AG	5322-5344	GT	GCG
(GCC)	 AG	5374-5584	GT	GGG
(GAA)	 AG	5610-5798	GT	AGG
(GCG)	 AG	5822-5833	GT	CGG
(GCG)	 AG	5857-5878	GT	GGG
-recovered GeneMark_model.107924_t, initial, 2736, 2869
add_exon() Sorry, GeneMark_model.107924_t 5610-5798-terminal-1 is invalid.
-recovered GeneMark_model.107924_t, terminal, 5610, 5798
-recovered GeneMark_model.107924_t, internal, 2893, 2967
-recovered GeneMark_model.107924_t, internal, 2989, 3021
-recovered GeneMark_model.107924_t, internal, 4700, 4789
-recovered GeneMark_model.107924_t, internal, 5322, 5344
-recovered GeneMark_model.107924_t, internal, 5374, 5584
-recovered GeneMark_model.107924_t, internal, 5610, 5798
-recovered GeneMark_model.107924_t, internal, 5822, 5833
-recovered GeneMark_model.107924_t, internal, 5857, 5878
Valid prediction for GlimmerHMM_glimmerT_61983-T1
Valid prediction for Augustus_model.g41200.t1
Valid prediction for snap_scaffold_555-snap.1-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3115, rend_intergenic: 133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5908
-exon list size: 38


building trellis

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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3115, rend_intergenic: 133  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support