-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_553

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107921_t
Valid prediction for snap_scaffold_553-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107920_t
Couldn't classify 38, 104
Sorry, prediction GeneMark_model.107922_t fails validation.
(GGA)	 AG	38-104	GT	AAG
(GAA)	 AG	1273-1283	GT	GGG
(AGG)	 AG	1310-1468	GT	GGG
(GAC)	 AG	1495-1519	AC	AGA
-recovered GeneMark_model.107922_t, terminal, 1495, 1519
-recovered GeneMark_model.107922_t, internal, 38, 104
-recovered GeneMark_model.107922_t, internal, 1273, 1283
-recovered GeneMark_model.107922_t, internal, 1310, 1468

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 5935
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support