-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_552

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for Augustus_model.g41198.t1
Couldn't classify 5327, 5409
Sorry, prediction GeneMark_model.107919_t fails validation.
(ATG)	 AG	2655-2716	GC	AGG
(AGA)	 AG	2763-2906	GT	CGG
(ACA)	 AG	2943-3084	GT	GAG
(AAC)	 AG	4962-4990	GT	AAG
(GAG)	 AG	5011-5088	GT	GAG
(AGT)	 AG	5114-5140	GT	GAG
(AGT)	 AG	5169-5195	GT	GAG
(AGA)	 AG	5216-5224	GT	GAG
(AGA)	 AG	5245-5253	GT	GAG
(AGT)	 AG	5279-5302	GT	GAG
(GGG)	 AG	5327-5409	GT	GAG
-recovered GeneMark_model.107919_t, initial, 2655, 2716
-recovered GeneMark_model.107919_t, internal, 2655, 2716
-recovered GeneMark_model.107919_t, internal, 2763, 2906
-recovered GeneMark_model.107919_t, internal, 2943, 3084
-recovered GeneMark_model.107919_t, internal, 4962, 4990
-recovered GeneMark_model.107919_t, internal, 5011, 5088
-recovered GeneMark_model.107919_t, internal, 5114, 5140
-recovered GeneMark_model.107919_t, internal, 5169, 5195
-recovered GeneMark_model.107919_t, internal, 5216, 5224
-recovered GeneMark_model.107919_t, internal, 5245, 5253
-recovered GeneMark_model.107919_t, internal, 5279, 5302
-recovered GeneMark_model.107919_t, internal, 5327, 5409
Couldn't classify 5020, 5382
Sorry, prediction snap_scaffold_552-snap.3-T1 fails validation.
(ATG)	 GA	4769-4793	GT	AGG
(AGA)	 AG	5020-5382	GT	AGG
-recovered snap_scaffold_552-snap.3-T1, initial, 4769, 4793
-recovered snap_scaffold_552-snap.3-T1, internal, 5020, 5382
Valid prediction for GeneMark_model.107918_t
Valid prediction for snap_scaffold_552-snap.2-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5673, 5849
Sorry, prediction snap_scaffold_552-snap.1-T1 fails validation.
(ATG)	 TC	2768-2773	GT	AGG
(AGA)	 AG	5673-5849	GT	CAG
-recovered snap_scaffold_552-snap.1-T1, initial, 2768, 2773
-recovered snap_scaffold_552-snap.1-T1, internal, 5673, 5849
Valid prediction for GeneMark_model.107917_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3172, rend_intergenic: 226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5939
-exon list size: 61


building trellis

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15.9    
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19.0    
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27.0    
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31.7    
33.3    
34.9    
36.5    
38.1    
39.7    
41.3    
42.9    
44.4    
46.0    
47.6    
49.2    
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54.0    
55.6    
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58.7    
60.3    
61.9    
63.5    
65.1    
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68.3    
69.8    
71.4    
73.0    
74.6    
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79.4    
81.0    
82.5    
84.1    
85.7    
87.3    
88.9    
90.5    
92.1    
93.7    
95.2    
96.8    
98.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3172, rend_intergenic: 226  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support