-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_551

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1941, 2043
Couldn't classify 4880, 4976
Sorry, prediction snap_scaffold_551-snap.2-T1 fails validation.
(ACA)	 AG	1941-2043	GT	TGG
(GAC)	 AG	2151-2286	GT	CAG
(GGT)	 AG	2789-2892	GT	AGG
(TTT)	 AG	4705-4768	GT	TGG
(AGC)	 AG	4810-4836	GT	TGG
(GTC)	 AG	4880-4976	GT	AAG
-recovered snap_scaffold_551-snap.2-T1, internal, 1941, 2043
-recovered snap_scaffold_551-snap.2-T1, internal, 2151, 2286
-recovered snap_scaffold_551-snap.2-T1, internal, 2789, 2892
-recovered snap_scaffold_551-snap.2-T1, internal, 4705, 4768
-recovered snap_scaffold_551-snap.2-T1, internal, 4810, 4836
-recovered snap_scaffold_551-snap.2-T1, internal, 4880, 4976
Valid prediction for GlimmerHMM_glimmerT_61981-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41197.t1
Valid prediction for snap_scaffold_551-snap.1-T1
Couldn't classify 1511, 1591
Sorry, prediction GeneMark_model.107916_t fails validation.
(GGG)	 AG	1511-1591	GT	TGG
(GGA)	 AG	1614-1649	GT	GGG
(AGG)	 AG	1675-1825	GT	CCG
(CCT)	 AG	1967-2062	GT	TGG
(AGG)	 AG	2467-2473	GT	AGG
(CCA)	 AG	3103-3277	GT	GAG
(CCG)	 AG	3686-3832	GT	ATG
(GCC)	 AG	3880-3987	GT	ATG
(AGA)	 AG	5024-5111	GT	GAG
(GCA)	 AG	5190-5333	CA	GAC
-recovered GeneMark_model.107916_t, terminal, 5190, 5333
-recovered GeneMark_model.107916_t, internal, 1511, 1591
-recovered GeneMark_model.107916_t, internal, 1614, 1649
-recovered GeneMark_model.107916_t, internal, 1675, 1825
-recovered GeneMark_model.107916_t, internal, 1967, 2062
-recovered GeneMark_model.107916_t, internal, 2467, 2473
-recovered GeneMark_model.107916_t, internal, 3103, 3277
-recovered GeneMark_model.107916_t, internal, 3686, 3832
-recovered GeneMark_model.107916_t, internal, 3880, 3987
-recovered GeneMark_model.107916_t, internal, 5024, 5111

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4455, rend_intergenic: 1941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5941
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4455, rend_intergenic: 1941  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support