-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_547

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5175, 5306
Sorry, prediction snap_scaffold_547-snap.1-T1 fails validation.
(ATG)	 TG	2600-2603	GT	GGG
(CGT)	 AG	4996-5105	GT	CGG
(GCA)	 AG	5112-5167	GT	CGG
(ACA)	 AG	5175-5306	GT	GGG
-recovered snap_scaffold_547-snap.1-T1, initial, 2600, 2603
-recovered snap_scaffold_547-snap.1-T1, internal, 4996, 5105
-recovered snap_scaffold_547-snap.1-T1, internal, 5112, 5167
-recovered snap_scaffold_547-snap.1-T1, internal, 5175, 5306
Sorry, intron length (5) is less than minimum required (10)
Sorry, intron length (6) is less than minimum required (10)
Couldn't classify 5333, 5364
Sorry, prediction GeneMark_model.107910_t fails validation.
(ATG)	 TG	4965-5090	GT	CCG
(GCA)	 AG	5112-5167	GT	CGG
(GAG)	 AG	5215-5223	GT	GGG
(AGG)	 AG	5244-5306	GT	GGG
(GAG)	 AG	5333-5364	GT	GGG
-recovered GeneMark_model.107910_t, initial, 4965, 5090
-recovered GeneMark_model.107910_t, internal, 5112, 5167
-recovered GeneMark_model.107910_t, internal, 5215, 5223
-recovered GeneMark_model.107910_t, internal, 5244, 5306
-recovered GeneMark_model.107910_t, internal, 5333, 5364

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 324, 412
Sorry, prediction snap_scaffold_547-snap.2-T1 fails validation.
(GAA)	 AG	324-412	GT	ACG
(CTC)	 AG	789-1025	GT	AGG
(TGC)	 AG	1555-1610	CT	AAC
-recovered snap_scaffold_547-snap.2-T1, terminal, 1555, 1610
-recovered snap_scaffold_547-snap.2-T1, internal, 324, 412
-recovered snap_scaffold_547-snap.2-T1, internal, 789, 1025
Couldn't classify 789, 1039
Sorry, prediction GlimmerHMM_glimmerT_61975-T1 fails validation.
(CTC)	 AG	789-1039	GT	TTG
(CAG)	 AG	1520-1602	GT	AGG
(CTA)	 AG	4001-4274	GA	GAG
-recovered GlimmerHMM_glimmerT_61975-T1, terminal, 4001, 4274
-recovered GlimmerHMM_glimmerT_61975-T1, internal, 789, 1039
-recovered GlimmerHMM_glimmerT_61975-T1, internal, 1520, 1602
Couldn't classify 324, 412
Sorry, prediction Augustus_model.g41194.t1 fails validation.
(GAA)	 AG	324-412	GT	ACG
(CTC)	 AG	789-1025	GT	AGG
(TGC)	 AG	1555-1610	CT	AAC
-recovered Augustus_model.g41194.t1, terminal, 1555, 1610
-recovered Augustus_model.g41194.t1, internal, 324, 412
-recovered Augustus_model.g41194.t1, internal, 789, 1025

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5306, rend_intergenic: 4375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 5984
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5306, rend_intergenic: 4375  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support