-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_545

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 192, 338
Sorry, prediction GeneMark_model.107907_t fails validation.
(GGG)	 AG	192-338	GT	CAG
(GTT)	 AG	363-377	GT	AAG
(AGA)	 AG	687-704	GT	AAG
(AAA)	 AG	1184-1207	GT	AGG
(AGT)	 AG	1928-2297	AG	AGA
-recovered GeneMark_model.107907_t, terminal, 1928, 2297
-recovered GeneMark_model.107907_t, internal, 192, 338
-recovered GeneMark_model.107907_t, internal, 363, 377
-recovered GeneMark_model.107907_t, internal, 687, 704
-recovered GeneMark_model.107907_t, internal, 1184, 1207
Valid prediction for GlimmerHMM_glimmerT_61973-T1
Couldn't classify 1121, 1237
Sorry, prediction Augustus_model.g41193.t1 fails validation.
(GTG)	 AG	1121-1237	GT	GTG
(ATG)	 AG	1668-1759	GT	AAG
(AGT)	 AG	1928-2297	AG	AGA
-recovered Augustus_model.g41193.t1, initial, 1668, 1759
-recovered Augustus_model.g41193.t1, terminal, 1928, 2297
-recovered Augustus_model.g41193.t1, internal, 1121, 1237
-recovered Augustus_model.g41193.t1, internal, 1668, 1759

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5070, 5156
Sorry, prediction snap_scaffold_545-snap.1-T1 fails validation.
(ATG)	 AG	3929-4027	GT	CGG
(GGA)	 AG	5070-5156	GT	TCG
-recovered snap_scaffold_545-snap.1-T1, initial, 3929, 4027
-recovered snap_scaffold_545-snap.1-T1, internal, 3929, 4027
-recovered snap_scaffold_545-snap.1-T1, internal, 5070, 5156

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6000
-exon list size: 22


building trellis

4.2    
8.3    
12.5    
16.7    
20.8    
25.0    
29.2    
33.3    
37.5    
41.7    
45.8    
50.0    
54.2    
58.3    
62.5    
66.7    
70.8    
75.0    
79.2    
83.3    
87.5    
91.7    
95.8    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support