-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_544

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 34, 54
Sorry, prediction GeneMark_model.107906_t fails validation.
(AGA)	 AG	34-54	GT	AGG
(AGG)	 AG	108-131	GT	GAG
(GAG)	 AG	355-393	GT	GAG
(AGA)	 AG	416-421	GT	AGG
(GGA)	 AG	448-508	GT	AGG
(ATT)	 AG	626-660	GT	GAG
(GGA)	 AG	737-829	GT	AAG
(GGA)	 AG	851-856	GT	AAG
(TGA)	 AG	886-909	GT	GAG
(GAG)	 AG	931-951	GT	AAG
(GAG)	 AG	972-977	GT	AGG
(GGC)	 AG	1000-1031	GT	CTG
(TGT)	 AG	1351-1376	GA	GAG
-recovered GeneMark_model.107906_t, terminal, 1351, 1376
-recovered GeneMark_model.107906_t, internal, 34, 54
-recovered GeneMark_model.107906_t, internal, 108, 131
-recovered GeneMark_model.107906_t, internal, 355, 393
-recovered GeneMark_model.107906_t, internal, 416, 421
-recovered GeneMark_model.107906_t, internal, 448, 508
-recovered GeneMark_model.107906_t, internal, 626, 660
-recovered GeneMark_model.107906_t, internal, 737, 829
-recovered GeneMark_model.107906_t, internal, 851, 856
-recovered GeneMark_model.107906_t, internal, 886, 909
-recovered GeneMark_model.107906_t, internal, 931, 951
-recovered GeneMark_model.107906_t, internal, 972, 977
-recovered GeneMark_model.107906_t, internal, 1000, 1031
Valid prediction for GeneMark_model.107905_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6000
-exon list size: 35


building trellis

2.7    
5.4    
8.1    
10.8    
13.5    
16.2    
18.9    
21.6    
24.3    
27.0    
29.7    
32.4    
35.1    
37.8    
40.5    
43.2    
45.9    
48.6    
51.4    
54.1    
56.8    
59.5    
62.2    
64.9    
67.6    
70.3    
73.0    
75.7    
78.4    
81.1    
83.8    
86.5    
89.2    
91.9    
94.6    
97.3    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support