-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_535

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 38, 141
Sorry, prediction GeneMark_model.107885_t fails validation.
(ACA)	 AG	38-141	GT	GGG
(CAT)	 AG	197-261	GG	GAG
-recovered GeneMark_model.107885_t, terminal, 197, 261
-recovered GeneMark_model.107885_t, internal, 38, 141
Couldn't classify 213, 308
Couldn't classify 3485, 3609
Sorry, prediction snap_scaffold_535-snap.2-T1 fails validation.
(CGT)	 AG	213-308	GT	TCG
(GTT)	 AG	3485-3609	GT	TTG
-recovered snap_scaffold_535-snap.2-T1, internal, 213, 308
-recovered snap_scaffold_535-snap.2-T1, internal, 3485, 3609

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5718, 5844
Sorry, prediction snap_scaffold_535-snap.1-T1 fails validation.
(ATG)	 AA	2429-2640	GT	CTG
(GGA)	 AG	2763-2883	GT	AGG
(GTG)	 AG	3195-3290	GT	AGG
(ATC)	 AG	3370-3600	GT	AGG
(AAC)	 AG	3687-3709	GT	AGG
(AGC)	 AG	3779-3897	GT	CAG
(TGA)	 AG	3961-4043	GT	CAG
(CTG)	 AG	5229-5303	GT	AGG
(GGG)	 AG	5718-5844	GT	AGG
-recovered snap_scaffold_535-snap.1-T1, initial, 2429, 2640
-recovered snap_scaffold_535-snap.1-T1, internal, 2763, 2883
-recovered snap_scaffold_535-snap.1-T1, internal, 3195, 3290
-recovered snap_scaffold_535-snap.1-T1, internal, 3370, 3600
-recovered snap_scaffold_535-snap.1-T1, internal, 3687, 3709
-recovered snap_scaffold_535-snap.1-T1, internal, 3779, 3897
-recovered snap_scaffold_535-snap.1-T1, internal, 3961, 4043
-recovered snap_scaffold_535-snap.1-T1, internal, 5229, 5303
-recovered snap_scaffold_535-snap.1-T1, internal, 5718, 5844
Couldn't classify 3370, 3600
Sorry, prediction GlimmerHMM_glimmerT_61961-T1 fails validation.
(ATC)	 AG	3370-3600	GT	AGG
(CTG)	 AG	5229-5531	TC	GAT
-recovered GlimmerHMM_glimmerT_61961-T1, terminal, 5229, 5531
-recovered GlimmerHMM_glimmerT_61961-T1, internal, 3370, 3600
Couldn't classify 5718, 5844
Sorry, prediction Augustus_model.g41185.t1 fails validation.
(ATG)	 TA	2992-3024	GT	CGG
(GTG)	 AG	3195-3290	GT	AGG
(ATC)	 AG	3370-3600	GT	AGG
(AAC)	 AG	3687-3709	GT	AGG
(AGC)	 AG	3779-3897	GT	CAG
(TGA)	 AG	3961-4043	GT	CAG
(CTG)	 AG	5229-5303	GT	AGG
(GGG)	 AG	5718-5844	GT	AGG
-recovered Augustus_model.g41185.t1, initial, 2992, 3024
-recovered Augustus_model.g41185.t1, internal, 3195, 3290
-recovered Augustus_model.g41185.t1, internal, 3370, 3600
-recovered Augustus_model.g41185.t1, internal, 3687, 3709
-recovered Augustus_model.g41185.t1, internal, 3779, 3897
-recovered Augustus_model.g41185.t1, internal, 3961, 4043
-recovered Augustus_model.g41185.t1, internal, 5229, 5303
-recovered Augustus_model.g41185.t1, internal, 5718, 5844
Couldn't classify 2821, 2883
Sorry, prediction GeneMark_model.107886_t fails validation.
(ACC)	 AG	2821-2883	GT	AGG
(ATC)	 AG	3370-3600	GT	AGG
(AAC)	 AG	3687-3709	GT	AGG
(AGC)	 AG	3779-3897	GT	CAG
(TGA)	 AG	3961-4043	GT	CAG
(CTG)	 AG	5229-5303	GT	AGG
(GAG)	 AG	5342-5404	CT	AGC
-recovered GeneMark_model.107886_t, terminal, 5342, 5404
-recovered GeneMark_model.107886_t, internal, 2821, 2883
-recovered GeneMark_model.107886_t, internal, 3370, 3600
-recovered GeneMark_model.107886_t, internal, 3687, 3709
-recovered GeneMark_model.107886_t, internal, 3779, 3897
-recovered GeneMark_model.107886_t, internal, 3961, 4043
-recovered GeneMark_model.107886_t, internal, 5229, 5303

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 3606, rend_intergenic: 213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6034
-exon list size: 25


building trellis

3.7    
7.4    
11.1    
14.8    
18.5    
22.2    
25.9    
29.6    
33.3    
37.0    
40.7    
44.4    
48.1    
51.9    
55.6    
59.3    
63.0    
66.7    
70.4    
74.1    
77.8    
81.5    
85.2    
88.9    
92.6    
96.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 3606, rend_intergenic: 213  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support