-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_533

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5896, 6019
Sorry, prediction GeneMark_model.107880_t fails validation.
(ATG)	 AG	3717-3730	GT	AGG
(GTG)	 AG	3884-3895	GT	AGG
(GGT)	 AG	3920-3926	GT	AGG
(GTG)	 AG	3978-4018	GT	AGG
(AGG)	 AG	5896-6019	GC	GAG
-recovered GeneMark_model.107880_t, initial, 3717, 3730
-recovered GeneMark_model.107880_t, internal, 3717, 3730
-recovered GeneMark_model.107880_t, internal, 3884, 3895
-recovered GeneMark_model.107880_t, internal, 3920, 3926
-recovered GeneMark_model.107880_t, internal, 3978, 4018
-recovered GeneMark_model.107880_t, internal, 5896, 6019
Valid prediction for GeneMark_model.107879_t
Couldn't classify 148, 189
Couldn't classify 2960, 2971
Sorry, prediction snap_scaffold_533-snap.2-T1 fails validation.
(AAT)	 AG	148-189	GT	AGG
(CGC)	 AG	1222-1365	GT	CTG
(CGC)	 AG	1578-1616	GT	AAG
(GTT)	 AG	2960-2971	GT	TGG
-recovered snap_scaffold_533-snap.2-T1, internal, 148, 189
-recovered snap_scaffold_533-snap.2-T1, internal, 1222, 1365
-recovered snap_scaffold_533-snap.2-T1, internal, 1578, 1616
-recovered snap_scaffold_533-snap.2-T1, internal, 2960, 2971

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 85, 182
Sorry, prediction snap_scaffold_533-snap.1-T1 fails validation.
(GGA)	 AG	85-182	GT	TCG
(GCG)	 AG	4633-4981	GT	AGG
(GAG)	 AG	5808-5904	AA	GAA
-recovered snap_scaffold_533-snap.1-T1, terminal, 5808, 5904
-recovered snap_scaffold_533-snap.1-T1, internal, 85, 182
-recovered snap_scaffold_533-snap.1-T1, internal, 4633, 4981
Couldn't classify 5426, 5434
Sorry, prediction GeneMark_model.107878_t fails validation.
(ATG)	 GG	4400-4455	GT	AGG
(GGG)	 AG	4717-4848	GT	TTG
(GGG)	 AG	4876-4884	GT	GGG
(GAG)	 AG	4906-4968	GT	GGG
(GAG)	 AG	4992-5009	GT	AGG
(GAG)	 AG	5035-5103	GT	TTG
(ACG)	 AG	5127-5144	GT	GAG
(GGA)	 AG	5169-5279	GT	GAG
(AGA)	 AG	5303-5365	GT	GAG
(GGG)	 AG	5388-5396	GT	GAG
(GAG)	 AG	5426-5434	GT	GAG
-recovered GeneMark_model.107878_t, initial, 4400, 4455
-recovered GeneMark_model.107878_t, internal, 4717, 4848
-recovered GeneMark_model.107878_t, internal, 4876, 4884
-recovered GeneMark_model.107878_t, internal, 4906, 4968
-recovered GeneMark_model.107878_t, internal, 4992, 5009
-recovered GeneMark_model.107878_t, internal, 5035, 5103
-recovered GeneMark_model.107878_t, internal, 5127, 5144
-recovered GeneMark_model.107878_t, internal, 5169, 5279
-recovered GeneMark_model.107878_t, internal, 5303, 5365
-recovered GeneMark_model.107878_t, internal, 5388, 5396
-recovered GeneMark_model.107878_t, internal, 5426, 5434

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5955, rend_intergenic: 148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6039
-exon list size: 57


building trellis

1.7    
3.4    
5.1    
6.8    
8.5    
10.2    
11.9    
13.6    
15.3    
16.9    
18.6    
20.3    
22.0    
23.7    
25.4    
27.1    
28.8    
30.5    
32.2    
33.9    
35.6    
37.3    
39.0    
40.7    
42.4    
44.1    
45.8    
47.5    
49.2    
50.8    
52.5    
54.2    
55.9    
57.6    
59.3    
61.0    
62.7    
64.4    
66.1    
67.8    
69.5    
71.2    
72.9    
74.6    
76.3    
78.0    
79.7    
81.4    
83.1    
84.7    
86.4    
88.1    
89.8    
91.5    
93.2    
94.9    
96.6    
98.3    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5955, rend_intergenic: 148  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support