-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_532

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 693, 754
Couldn't classify 5446, 5651
Sorry, prediction snap_scaffold_532-snap.1-T1 fails validation.
(GCT)	 AG	693-754	GT	CGG
(CTC)	 AG	802-905	GT	TGG
(GTC)	 AG	3560-3702	GT	TGG
(GAC)	 AG	5446-5651	GT	TCG
-recovered snap_scaffold_532-snap.1-T1, internal, 693, 754
-recovered snap_scaffold_532-snap.1-T1, internal, 802, 905
-recovered snap_scaffold_532-snap.1-T1, internal, 3560, 3702
-recovered snap_scaffold_532-snap.1-T1, internal, 5446, 5651
Valid prediction for GeneMark_model.107876_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 2389, 2499
Couldn't classify 5226, 5309
Sorry, prediction snap_scaffold_532-snap.2-T1 fails validation.
(TGT)	 AG	2389-2499	GT	GGG
(CGG)	 AG	5226-5309	GT	AGG
-recovered snap_scaffold_532-snap.2-T1, internal, 2389, 2499
-recovered snap_scaffold_532-snap.2-T1, internal, 5226, 5309
Couldn't classify 1606, 1716
Sorry, prediction GeneMark_model.107877_t fails validation.
(CGA)	 AG	1606-1716	GT	AGG
(GGA)	 AG	1805-1839	GT	GGG
(GAG)	 AG	1860-1920	GT	AAG
(AGA)	 AG	2190-2276	GT	GAG
(GCC)	 AG	2458-2499	GT	GGG
(ATG)	 AG	2531-2618	GA	GAG
add_exon() Sorry, GeneMark_model.107877_t 1606-1716-terminal-1 is invalid.
-recovered GeneMark_model.107877_t, terminal, 1606, 1716
-recovered GeneMark_model.107877_t, terminal, 2531, 2618
-recovered GeneMark_model.107877_t, internal, 1606, 1716
-recovered GeneMark_model.107877_t, internal, 1805, 1839
-recovered GeneMark_model.107877_t, internal, 1860, 1920
-recovered GeneMark_model.107877_t, internal, 2190, 2276
-recovered GeneMark_model.107877_t, internal, 2458, 2499
Valid prediction for GeneMark_model.107875_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5651, rend_intergenic: 739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6047
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5651, rend_intergenic: 739  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support