-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_530

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6017, 6022
Sorry, prediction GeneMark_model.107871_t fails validation.
(ATG)	 AA	1654-1670	GT	AGG
(AGA)	 AG	4459-4515	GT	AAG
(AGA)	 AG	4551-4556	GT	GGG
(GGA)	 AG	4581-4735	GT	AGG
(GCT)	 AG	5401-5467	GT	TCG
(GGC)	 AG	5622-5645	GT	GTG
(ACA)	 AG	5964-5984	GC	GAG
(AGA)	 AG	6017-6022	GT	GAG
-recovered GeneMark_model.107871_t, initial, 1654, 1670
-recovered GeneMark_model.107871_t, internal, 4459, 4515
-recovered GeneMark_model.107871_t, internal, 4551, 4556
-recovered GeneMark_model.107871_t, internal, 4581, 4735
-recovered GeneMark_model.107871_t, internal, 5401, 5467
-recovered GeneMark_model.107871_t, internal, 5622, 5645
-recovered GeneMark_model.107871_t, internal, 5964, 5984
-recovered GeneMark_model.107871_t, internal, 6017, 6022
Valid prediction for GeneMark_model.107872_t
Couldn't classify 34, 93
Sorry, prediction GeneMark_model.107873_t fails validation.
(AGG)	 AG	34-93	GC	CGG
(TGA)	 AG	237-293	GT	CGG
(GGG)	 AG	319-373	CT	AGC
-recovered GeneMark_model.107873_t, terminal, 319, 373
-recovered GeneMark_model.107873_t, internal, 34, 93
-recovered GeneMark_model.107873_t, internal, 237, 293

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6057
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support