-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_53 -reading genomic sequence. ** Processing features (+) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: +) -loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61074-T1 Couldn't classify 3463, 3786 Sorry, prediction snap_scaffold_53-snap.1-T1 fails validation. (AGG) AG 3463-3786 GT GGG (ATA) AG 4947-5101 GT AGG (GGT) AG 5651-6016 CC GAC -recovered snap_scaffold_53-snap.1-T1, terminal, 5651, 6016 -recovered snap_scaffold_53-snap.1-T1, internal, 3463, 3786 -recovered snap_scaffold_53-snap.1-T1, internal, 4947, 5101 Valid prediction for GlimmerHMM_glimmerT_61071-T1 Valid prediction for snap_scaffold_53-snap.3-T1 Valid prediction for Augustus_model.g40629.t1 Couldn't classify 7905, 8179 Sorry, prediction pasa_asmbl_46492.p1 fails validation. (ATG) GG 7398-7437 GT TGG (CTC) AG 7905-8179 AC TGA -recovered pasa_asmbl_46492.p1, initial, 7398, 7437 Valid prediction for Augustus_model.g40627.t1 Valid prediction for Augustus_model.g40628.t1 Valid prediction for GeneMark_model.106283_t Valid prediction for GeneMark_model.106282_t Valid prediction for GlimmerHMM_glimmerT_61072-T1 Couldn't classify 15309, 15481 Couldn't classify 15997, 16144 Sorry, prediction pasa_asmbl_46493.p1 fails validation. (AGA) AC 15309-15481 GT AGG (AAT) AG 15667-15837 GT AGG (GCT) AG 15997-16144 AA TCA -recovered pasa_asmbl_46493.p1, internal, 15667, 15837 Valid prediction for GeneMark_model.106286_t -loading the search evidence (protein and EST search results, strand: +) -scoring exons (strand: +) ** Processing features (-) -finding all potential splice sites, looking for GT/GC donors and AG acceptors. -finding all potential starts and stops. (strand: -) -loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_53-snap.4-T1 Valid prediction for GeneMark_model.106285_t Valid prediction for GeneMark_model.106287_t Couldn't classify 31, 550 Sorry, prediction snap_scaffold_53-snap.5-T1 fails validation. (CTT) AG 31-550 GT CAG (TCA) AG 1834-1974 GT GGG (TTA) AG 2046-2151 GT CAG (AAG) AG 2441-2634 GT CGG (GCC) AG 2739-2887 GT GAG (TCT) AG 2987-3260 GT AAG (GCT) AG 3367-3471 GT CTG (GTG) AG 3731-3829 TG GAT -recovered snap_scaffold_53-snap.5-T1, terminal, 3731, 3829 -recovered snap_scaffold_53-snap.5-T1, internal, 31, 550 -recovered snap_scaffold_53-snap.5-T1, internal, 1834, 1974 -recovered snap_scaffold_53-snap.5-T1, internal, 2046, 2151 -recovered snap_scaffold_53-snap.5-T1, internal, 2441, 2634 -recovered snap_scaffold_53-snap.5-T1, internal, 2739, 2887 -recovered snap_scaffold_53-snap.5-T1, internal, 2987, 3260 -recovered snap_scaffold_53-snap.5-T1, internal, 3367, 3471 Valid prediction for GeneMark_model.106284_t Couldn't classify 10, 826 Sorry, prediction GeneMark_model.106288_t fails validation. (CTG) AG 10-826 GC CAG (TAC) AG 999-1603 GT CCG (GCC) AG 1812-1898 GT CTG (GTT) AG 1927-2017 GT AGG (TTA) AG 2046-2151 GT CAG (CCA) AG 2510-2634 GT CGG (GCC) AG 2739-2887 GT GAG (GAC) AG 3026-3260 GT AAG (GCT) AG 3367-3471 GT CTG (TAA) AG 3556-3558 CT AAC -recovered GeneMark_model.106288_t, terminal, 3556, 3558 -recovered GeneMark_model.106288_t, internal, 10, 826 -recovered GeneMark_model.106288_t, internal, 999, 1603 -recovered GeneMark_model.106288_t, internal, 1812, 1898 -recovered GeneMark_model.106288_t, internal, 1927, 2017 -recovered GeneMark_model.106288_t, internal, 2046, 2151 -recovered GeneMark_model.106288_t, internal, 2510, 2634 -recovered GeneMark_model.106288_t, internal, 2739, 2887 -recovered GeneMark_model.106288_t, internal, 3026, 3260 -recovered GeneMark_model.106288_t, internal, 3367, 3471 Valid prediction for Augustus_model.g40630.t1 Valid prediction for snap_scaffold_53-snap.2-T1 Couldn't classify 2, 886 Sorry, prediction GlimmerHMM_glimmerT_61076-T1 fails validation. (AAC) A 2-886 AC TAA Valid prediction for GlimmerHMM_glimmerT_61075-T1 Valid prediction for GlimmerHMM_glimmerT_61073-T1 -loading the search evidence (protein and EST search results, strand: -) -scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6016, rend_intergenic: 4943 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7819, rend_intergenic: 6024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19798, rend_intergenic: 8961 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. -building DP trellis -building trellis in range 1 - 27609 -exon list size: 107 building trellis 0.9 1.8 2.8 3.7 4.6 5.5 6.4 7.3 8.3 9.2 10.1 11.0 11.9 12.8 13.8 14.7 15.6 16.5 17.4 18.3 19.3 20.2 21.1 22.0 22.9 23.9 24.8 25.7 26.6 27.5 28.4 29.4 30.3 31.2 32.1 33.0 33.9 34.9 35.8 36.7 37.6 38.5 39.4 40.4 41.3 42.2 43.1 44.0 45.0 45.9 46.8 47.7 48.6 49.5 50.5 51.4 52.3 53.2 54.1 55.0 56.0 56.9 57.8 58.7 59.6 60.6 61.5 62.4 63.3 64.2 65.1 66.1 67.0 67.9 68.8 69.7 70.6 71.6 72.5 73.4 74.3 75.2 76.1 77.1 78.0 78.9 79.8 80.7 81.7 82.6 83.5 84.4 85.3 86.2 87.2 88.1 89.0 89.9 90.8 91.7 92.7 93.6 94.5 95.4 96.3 97.2 98.2 99.1 -found 6 predictions from path traversal Error with prediction: snap lend_intergenic: 6016, rend_intergenic: 4943 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 7819, rend_intergenic: 6024 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. Error with prediction: snap lend_intergenic: 19798, rend_intergenic: 8961 at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218. GOT 5prime partial gene. GOT 5prime partial gene. -reporting highest scoring path thru the trellis. -found 5 predictions persist after filtering for low support