-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_528

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5231, 5406
Sorry, prediction snap_scaffold_528-snap.3-T1 fails validation.
(ATG)	 AC	2535-2599	GT	AGG
(AAA)	 AG	5231-5406	GT	AAG
-recovered snap_scaffold_528-snap.3-T1, initial, 2535, 2599
-recovered snap_scaffold_528-snap.3-T1, internal, 5231, 5406
Valid prediction for snap_scaffold_528-snap.1-T1
Sorry, intron length (3) is less than minimum required (10)
Couldn't classify 197, 319
Sorry, prediction GeneMark_model.107865_t fails validation.
(GGC)	 AG	197-319	GC	AGG
(GTG)	 AG	350-431	CT	AGC
-recovered GeneMark_model.107865_t, terminal, 350, 431
-recovered GeneMark_model.107865_t, internal, 197, 319
Valid prediction for GeneMark_model.107868_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 3495, 3556
Sorry, prediction GlimmerHMM_glimmerT_61959-T1 fails validation.
(GTC)	 AG	3495-3556	GT	AGG
(AGA)	 AG	4230-4298	AG	GAA
-recovered GlimmerHMM_glimmerT_61959-T1, terminal, 4230, 4298
-recovered GlimmerHMM_glimmerT_61959-T1, internal, 3495, 3556
Couldn't classify 5073, 5387
Sorry, prediction Augustus_model.g41183.t1 fails validation.
(ATG)	 GG	2688-2697	GT	AGG
(GTC)	 AG	3495-3556	GT	AGG
(GTG)	 AG	5073-5387	GT	CAG
-recovered Augustus_model.g41183.t1, initial, 2688, 2697
-recovered Augustus_model.g41183.t1, internal, 3495, 3556
-recovered Augustus_model.g41183.t1, internal, 5073, 5387
Valid prediction for GlimmerHMM_glimmerT_61958-T1
Couldn't classify 34, 54
Sorry, prediction GeneMark_model.107869_t fails validation.
(AGA)	 AG	34-54	GT	GAG
(GAG)	 AG	595-603	GT	GAG
(AGG)	 AG	948-1037	GT	GAG
(GGG)	 AG	1064-1075	GT	GAG
(GGG)	 AG	1106-1132	GT	GAG
(GAC)	 AG	2485-2541	GT	GGG
(GGG)	 AG	2669-2697	GT	AGG
(GTC)	 AG	3495-3565	TC	GAT
-recovered GeneMark_model.107869_t, terminal, 3495, 3565
-recovered GeneMark_model.107869_t, internal, 34, 54
-recovered GeneMark_model.107869_t, internal, 595, 603
-recovered GeneMark_model.107869_t, internal, 948, 1037
-recovered GeneMark_model.107869_t, internal, 1064, 1075
-recovered GeneMark_model.107869_t, internal, 1106, 1132
-recovered GeneMark_model.107869_t, internal, 2485, 2541
-recovered GeneMark_model.107869_t, internal, 2669, 2697
Valid prediction for GeneMark_model.107866_t
Couldn't classify 5073, 5387
Sorry, prediction snap_scaffold_528-snap.2-T1 fails validation.
(ATG)	 AG	2455-2536	GT	GGG
(GTC)	 AG	3495-3556	GT	AGG
(GTG)	 AG	5073-5387	GT	CAG
-recovered snap_scaffold_528-snap.2-T1, initial, 2455, 2536
-recovered snap_scaffold_528-snap.2-T1, internal, 2455, 2536
-recovered snap_scaffold_528-snap.2-T1, internal, 3495, 3556
-recovered snap_scaffold_528-snap.2-T1, internal, 5073, 5387

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2476, rend_intergenic: 695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3627, rend_intergenic: 2535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6081
-exon list size: 47


building trellis

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51.0    
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-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2476, rend_intergenic: 695  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 3627, rend_intergenic: 2535  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support