-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_526

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 2012, 2533
Sorry, prediction snap_scaffold_526-snap.3-T1 fails validation.
(CCC)	 AG	2012-2533	GT	GGG
(ATC)	 AG	4618-5096	GT	GGG
(GGG)	 AG	5682-5851	GT	AGG
add_exon() Sorry, snap_scaffold_526-snap.3-T1 5682-5851-terminal-2 is invalid.
-recovered snap_scaffold_526-snap.3-T1, terminal, 5682, 5851
-recovered snap_scaffold_526-snap.3-T1, internal, 2012, 2533
-recovered snap_scaffold_526-snap.3-T1, internal, 4618, 5096
-recovered snap_scaffold_526-snap.3-T1, internal, 5682, 5851
Valid prediction for GlimmerHMM_glimmerT_61956-T1
Valid prediction for Augustus_model.g41181.t1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 274, 434
Sorry, prediction GeneMark_model.107861_t fails validation.
(ATT)	 AG	274-434	GT	TGG
(ACC)	 AG	999-1339	GT	AGG
(GAG)	 AG	1522-1620	GT	AAG
(GAG)	 AG	1645-1926	GT	CAG
(AAG)	 AG	2086-2128	GT	AGG
(GAG)	 AG	2251-2258	GT	GTG
(GAT)	 AG	2332-2355	GT	GAG
(TCT)	 AG	2381-2411	AA	AGA
-recovered GeneMark_model.107861_t, terminal, 2332, 2355
-recovered GeneMark_model.107861_t, terminal, 2381, 2411
-recovered GeneMark_model.107861_t, internal, 274, 434
-recovered GeneMark_model.107861_t, internal, 999, 1339
-recovered GeneMark_model.107861_t, internal, 1522, 1620
-recovered GeneMark_model.107861_t, internal, 1645, 1926
-recovered GeneMark_model.107861_t, internal, 2086, 2128
-recovered GeneMark_model.107861_t, internal, 2251, 2258
-recovered GeneMark_model.107861_t, internal, 2332, 2355
Valid prediction for snap_scaffold_526-snap.1-T1
Valid prediction for Augustus_model.g41180.t1
Valid prediction for GlimmerHMM_glimmerT_61955-T1
Valid prediction for GeneMark_model.107860_t
Couldn't classify 274, 434
Sorry, prediction snap_scaffold_526-snap.2-T1 fails validation.
(ATT)	 AG	274-434	GT	TGG
(ACC)	 AG	999-1339	GT	AGG
(GGG)	 AG	1494-1844	GT	GGG
(ATG)	 AG	3547-4099	GG	GAG
-recovered snap_scaffold_526-snap.2-T1, terminal, 3547, 4099
-recovered snap_scaffold_526-snap.2-T1, internal, 274, 434
-recovered snap_scaffold_526-snap.2-T1, internal, 999, 1339
-recovered snap_scaffold_526-snap.2-T1, internal, 1494, 1844

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5830, rend_intergenic: 2012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6103
-exon list size: 44


building trellis

2.2    
4.3    
6.5    
8.7    
10.9    
13.0    
15.2    
17.4    
19.6    
21.7    
23.9    
26.1    
28.3    
30.4    
32.6    
34.8    
37.0    
39.1    
41.3    
43.5    
45.7    
47.8    
50.0    
52.2    
54.3    
56.5    
58.7    
60.9    
63.0    
65.2    
67.4    
69.6    
71.7    
73.9    
76.1    
78.3    
80.4    
82.6    
84.8    
87.0    
89.1    
91.3    
93.5    
95.7    
97.8    
-found 3 predictions from path traversal
Error with prediction: snap lend_intergenic: 5830, rend_intergenic: 2012  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support