-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_525

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 107, 142
Sorry, prediction snap_scaffold_525-snap.1-T1 fails validation.
(GCA)	 AG	107-142	GT	CGG
(TAG)	 AG	354-477	GT	AGG
(AGT)	 AG	2974-3323	GT	GGG
(CGG)	 AG	4467-4525	TG	GAT
-recovered snap_scaffold_525-snap.1-T1, terminal, 4467, 4525
-recovered snap_scaffold_525-snap.1-T1, internal, 107, 142
-recovered snap_scaffold_525-snap.1-T1, internal, 354, 477
-recovered snap_scaffold_525-snap.1-T1, internal, 2974, 3323
Couldn't classify 2974, 3323
Sorry, prediction GlimmerHMM_glimmerT_61954-T1 fails validation.
(ATG)	 AC	235-317	GT	GTG
(AGT)	 AG	2974-3323	GT	GGG
-recovered GlimmerHMM_glimmerT_61954-T1, initial, 235, 317
-recovered GlimmerHMM_glimmerT_61954-T1, internal, 2974, 3323
Couldn't classify 270, 329
Sorry, prediction GeneMark_model.107859_t fails validation.
(GAC)	 AG	270-329	GT	GAG
(TCC)	 AG	452-477	GT	AGG
(AGG)	 AG	1454-1475	GT	GGG
(AGA)	 AG	1499-1516	GT	GCG
(AGA)	 AG	1542-1721	GT	AGG
(GGA)	 AG	1752-1856	GT	GGG
(GAA)	 AG	1899-1951	GT	AAG
(GGC)	 AG	2985-3357	GT	AAG
(GAA)	 AG	4499-4511	AG	GAA
-recovered GeneMark_model.107859_t, terminal, 4499, 4511
-recovered GeneMark_model.107859_t, internal, 270, 329
-recovered GeneMark_model.107859_t, internal, 452, 477
-recovered GeneMark_model.107859_t, internal, 1454, 1475
-recovered GeneMark_model.107859_t, internal, 1499, 1516
-recovered GeneMark_model.107859_t, internal, 1542, 1721
-recovered GeneMark_model.107859_t, internal, 1752, 1856
-recovered GeneMark_model.107859_t, internal, 1899, 1951
-recovered GeneMark_model.107859_t, internal, 2985, 3357

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6115
-exon list size: 26


building trellis

3.6    
7.1    
10.7    
14.3    
17.9    
21.4    
25.0    
28.6    
32.1    
35.7    
39.3    
42.9    
46.4    
50.0    
53.6    
57.1    
60.7    
64.3    
67.9    
71.4    
75.0    
78.6    
82.1    
85.7    
89.3    
92.9    
96.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support