-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_523

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107855_t
Couldn't classify 129, 503
Sorry, prediction snap_scaffold_523-snap.2-T1 fails validation.
(GTG)	 AG	129-503	GT	CAG
(GGT)	 AG	711-791	GT	GGG
(GTT)	 AG	1152-1288	GT	GCG
(GAC)	 AG	1293-1383	GT	ACG
(GTT)	 AG	1644-1773	GT	AGG
(GGG)	 AG	3377-3433	GT	GGG
(ACA)	 AG	5133-5599	AA	GAA
-recovered snap_scaffold_523-snap.2-T1, terminal, 5133, 5599
-recovered snap_scaffold_523-snap.2-T1, internal, 129, 503
-recovered snap_scaffold_523-snap.2-T1, internal, 711, 791
-recovered snap_scaffold_523-snap.2-T1, internal, 1152, 1288
-recovered snap_scaffold_523-snap.2-T1, internal, 1293, 1383
-recovered snap_scaffold_523-snap.2-T1, internal, 1644, 1773
-recovered snap_scaffold_523-snap.2-T1, internal, 3377, 3433
Sorry, intron length (3) is less than minimum required (10)

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107854_t
Valid prediction for Augustus_model.g41178.t1
Couldn't classify 4343, 4544
Sorry, prediction snap_scaffold_523-snap.1-T1 fails validation.
(GTA)	 AG	4343-4544	GT	AGG
(CCG)	 AG	4768-5145	GT	AGG
(GGC)	 AG	5316-5458	GT	CAG
(ACT)	 AG	5652-6112	AC	GAA
-recovered snap_scaffold_523-snap.1-T1, terminal, 5652, 6112
-recovered snap_scaffold_523-snap.1-T1, internal, 4343, 4544
-recovered snap_scaffold_523-snap.1-T1, internal, 4768, 5145
-recovered snap_scaffold_523-snap.1-T1, internal, 5316, 5458
Couldn't classify 4372, 4544
Sorry, prediction pasa_asmbl_46489.p1 fails validation.
(GAA)	 CG	4372-4544	GT	AGG
(CCG)	 AG	4768-5009	GT	CGG
(ACT)	 AG	5652-6112	AC	GAA
-recovered pasa_asmbl_46489.p1, terminal, 5652, 6112
-recovered pasa_asmbl_46489.p1, internal, 4768, 5009
Valid prediction for GeneMark_model.107856_t
add_exon() Sorry, GeneMark_model.107856_t 88-269-terminal-1 is invalid.
Couldn't classify 4343, 4544
Sorry, prediction GlimmerHMM_glimmerT_61951-T1 fails validation.
(GTA)	 AG	4343-4544	GT	AGG
(CCG)	 AG	4768-5009	GT	CGG
(ACT)	 AG	5652-6112	AC	GAA
-recovered GlimmerHMM_glimmerT_61951-T1, terminal, 5652, 6112
-recovered GlimmerHMM_glimmerT_61951-T1, internal, 4343, 4544
-recovered GlimmerHMM_glimmerT_61951-T1, internal, 4768, 5009

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 1789, rend_intergenic: 129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6131
-exon list size: 43


building trellis

2.2    
4.4    
6.7    
8.9    
11.1    
13.3    
15.6    
17.8    
20.0    
22.2    
24.4    
26.7    
28.9    
31.1    
33.3    
35.6    
37.8    
40.0    
42.2    
44.4    
46.7    
48.9    
51.1    
53.3    
55.6    
57.8    
60.0    
62.2    
64.4    
66.7    
68.9    
71.1    
73.3    
75.6    
77.8    
80.0    
82.2    
84.4    
86.7    
88.9    
91.1    
93.3    
95.6    
97.8    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 1789, rend_intergenic: 129  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support