-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_522

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107852_t
Valid prediction for GeneMark_model.107851_t
Couldn't classify 123, 284
Sorry, prediction Augustus_model.g41177.t1 fails validation.
(GGC)	 AG	123-284	GT	GGG
(GTC)	 AG	1658-1753	TT	AGT
-recovered Augustus_model.g41177.t1, terminal, 1658, 1753
-recovered Augustus_model.g41177.t1, internal, 123, 284

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107853_t
add_exon() Sorry, GeneMark_model.107853_t 11-237-terminal-1 is invalid.
Valid prediction for GeneMark_model.107850_t
Couldn't classify 39, 213
Sorry, prediction snap_scaffold_522-snap.1-T1 fails validation.
(CTT)	 AG	39-213	GT	ACG
(CGC)	 AG	1606-1752	GT	CCG
(ACG)	 AG	1793-1927	GT	GAG
(CCC)	 AG	5804-5950	AA	GAA
-recovered snap_scaffold_522-snap.1-T1, terminal, 5804, 5950
-recovered snap_scaffold_522-snap.1-T1, internal, 39, 213
-recovered snap_scaffold_522-snap.1-T1, internal, 1606, 1752
-recovered snap_scaffold_522-snap.1-T1, internal, 1793, 1927
Couldn't classify 1793, 1945
Sorry, prediction GlimmerHMM_glimmerT_61950-T1 fails validation.
(ACG)	 AG	1793-1945	GT	AGG
(CTC)	 AG	4890-5009	TG	AAT
-recovered GlimmerHMM_glimmerT_61950-T1, terminal, 4890, 5009
-recovered GlimmerHMM_glimmerT_61950-T1, internal, 1793, 1945

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6144
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 3 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support