-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_521

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 5776, 5811
Sorry, prediction snap_scaffold_521-snap.3-T1 fails validation.
(ATG)	 CC	2588-2714	GT	AGG
(TAC)	 AG	2903-2925	GT	ATG
(ATA)	 AG	3045-3186	GT	GTG
(TTC)	 AG	4280-4308	GT	AGG
(CGG)	 AG	5776-5811	GT	TGG
-recovered snap_scaffold_521-snap.3-T1, initial, 2588, 2714
-recovered snap_scaffold_521-snap.3-T1, internal, 2903, 2925
-recovered snap_scaffold_521-snap.3-T1, internal, 3045, 3186
-recovered snap_scaffold_521-snap.3-T1, internal, 4280, 4308
-recovered snap_scaffold_521-snap.3-T1, internal, 5776, 5811
Couldn't classify 1239, 1344
Sorry, prediction GeneMark_model.107848_t fails validation.
(AGC)	 AG	1239-1344	GT	GGG
(AGG)	 AG	1450-1697	GT	CAG
(AGA)	 AG	1836-1874	GT	GAG
(AGA)	 AG	1907-2062	GT	GAG
(GAA)	 AG	2113-2136	GT	GGG
(AGA)	 AG	2185-2291	GT	GAG
(TCC)	 AG	2418-2487	GT	TTG
(GGT)	 AG	2541-2714	GT	AGG
(AAA)	 AG	2752-2814	GT	AAG
(AAC)	 AG	2952-2960	GT	TGG
(GAG)	 AG	3077-3184	GT	CGG
(CGT)	 AG	3206-3235	GT	GTG
(AGG)	 AG	3271-3309	GT	GTG
(GAG)	 AG	3339-3362	GT	GTG
(GGA)	 AG	3421-3453	GT	GTG
(AGA)	 AG	3503-3538	GT	GTG
(GGA)	 AG	3562-3570	GT	GTG
(AGA)	 AG	3638-3694	GT	AGG
(GAG)	 AG	3746-3751	GT	GTG
(AGA)	 AG	3801-3809	GT	GGG
(AGA)	 AG	3832-3843	GT	ATG
(AGG)	 AG	3865-3891	GT	GTG
(AGA)	 AG	3913-3921	GT	GTG
(GGG)	 AG	3943-3969	GT	GTG
(AGA)	 AG	3996-4028	GT	GTG
(AGG)	 AG	4052-4060	GT	GTG
(TGC)	 AG	4082-4124	CC	AGC
-recovered GeneMark_model.107848_t, terminal, 4082, 4124
-recovered GeneMark_model.107848_t, internal, 1239, 1344
-recovered GeneMark_model.107848_t, internal, 1450, 1697
-recovered GeneMark_model.107848_t, internal, 1836, 1874
-recovered GeneMark_model.107848_t, internal, 1907, 2062
-recovered GeneMark_model.107848_t, internal, 2113, 2136
-recovered GeneMark_model.107848_t, internal, 2185, 2291
-recovered GeneMark_model.107848_t, internal, 2418, 2487
-recovered GeneMark_model.107848_t, internal, 2541, 2714
-recovered GeneMark_model.107848_t, internal, 2752, 2814
-recovered GeneMark_model.107848_t, internal, 2952, 2960
-recovered GeneMark_model.107848_t, internal, 3077, 3184
-recovered GeneMark_model.107848_t, internal, 3206, 3235
-recovered GeneMark_model.107848_t, internal, 3271, 3309
-recovered GeneMark_model.107848_t, internal, 3339, 3362
-recovered GeneMark_model.107848_t, internal, 3421, 3453
-recovered GeneMark_model.107848_t, internal, 3503, 3538
-recovered GeneMark_model.107848_t, internal, 3562, 3570
-recovered GeneMark_model.107848_t, internal, 3638, 3694
-recovered GeneMark_model.107848_t, internal, 3746, 3751
-recovered GeneMark_model.107848_t, internal, 3801, 3809
-recovered GeneMark_model.107848_t, internal, 3832, 3843
-recovered GeneMark_model.107848_t, internal, 3865, 3891
-recovered GeneMark_model.107848_t, internal, 3913, 3921
-recovered GeneMark_model.107848_t, internal, 3943, 3969
-recovered GeneMark_model.107848_t, internal, 3996, 4028
-recovered GeneMark_model.107848_t, internal, 4052, 4060
Valid prediction for snap_scaffold_521-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41176.t1
Couldn't classify 3475, 3699
Sorry, prediction snap_scaffold_521-snap.2-T1 fails validation.
(ATG)	 AG	1830-1983	GT	AGG
(GAC)	 AG	3475-3699	GT	GGG
-recovered snap_scaffold_521-snap.2-T1, initial, 1830, 1983
-recovered snap_scaffold_521-snap.2-T1, internal, 1830, 1983
-recovered snap_scaffold_521-snap.2-T1, internal, 3475, 3699
Valid prediction for GlimmerHMM_glimmerT_61949-T1
Couldn't classify 1372, 1452
Sorry, prediction GeneMark_model.107849_t fails validation.
(AGG)	 AG	1372-1452	GT	GAG
(GGG)	 AG	1537-1792	AC	GAA
-recovered GeneMark_model.107849_t, terminal, 1537, 1792
-recovered GeneMark_model.107849_t, internal, 1372, 1452

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4353, rend_intergenic: 2588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6182
-exon list size: 82


building trellis

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97.6    
98.8    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 4353, rend_intergenic: 2588  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support