-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_519

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 6089, 6186
Sorry, prediction GeneMark_model.107847_t fails validation.
(ATG)	 AG	4339-4454	GT	GAG
(GCA)	 AG	5989-6063	GT	GGG
(GGA)	 AG	6089-6186	GC	GGG
-recovered GeneMark_model.107847_t, initial, 4339, 4454
-recovered GeneMark_model.107847_t, internal, 4339, 4454
-recovered GeneMark_model.107847_t, internal, 5989, 6063
-recovered GeneMark_model.107847_t, internal, 6089, 6186

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6081, 6191
Sorry, prediction GeneMark_model.107846_t fails validation.
(ATG)	 AG	2179-2267	GT	AGG
(GAA)	 AG	2445-2453	GT	GTG
(GGA)	 AG	5369-5467	GT	GAG
(AGA)	 AG	5489-5533	GT	AGG
(GAA)	 AG	5568-5579	GT	AGG
(AGA)	 AG	5763-5789	GT	TTG
(AGC)	 AG	5813-5884	GT	CAG
(AGA)	 AG	5905-5910	GT	CGG
(ACA)	 AG	5933-6058	GT	CAG
(AGA)	 AG	6081-6191	GT	ATG
-recovered GeneMark_model.107846_t, initial, 2179, 2267
-recovered GeneMark_model.107846_t, terminal, 2179, 2267
-recovered GeneMark_model.107846_t, internal, 2179, 2267
-recovered GeneMark_model.107846_t, internal, 2445, 2453
-recovered GeneMark_model.107846_t, internal, 5369, 5467
-recovered GeneMark_model.107846_t, internal, 5489, 5533
-recovered GeneMark_model.107846_t, internal, 5568, 5579
-recovered GeneMark_model.107846_t, internal, 5763, 5789
-recovered GeneMark_model.107846_t, internal, 5813, 5884
-recovered GeneMark_model.107846_t, internal, 5905, 5910
-recovered GeneMark_model.107846_t, internal, 5933, 6058
-recovered GeneMark_model.107846_t, internal, 6081, 6191

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6217
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support