-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_516

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 34, 114
Sorry, prediction GeneMark_model.107840_t fails validation.
(AGA)	 AG	34-114	GT	GGG
(TTT)	 AG	521-881	AG	AGA
-recovered GeneMark_model.107840_t, terminal, 521, 881
-recovered GeneMark_model.107840_t, internal, 34, 114
Couldn't classify 5168, 5289
Couldn't classify 6140, 6217
Sorry, prediction snap_scaffold_516-snap.2-T1 fails validation.
(AAT)	 AG	5168-5289	GT	AGG
(GCA)	 AG	6140-6217	GT	GGG
-recovered snap_scaffold_516-snap.2-T1, internal, 5168, 5289
-recovered snap_scaffold_516-snap.2-T1, internal, 6140, 6217
Valid prediction for GeneMark_model.107842_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61946-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61946-T1 101-306-terminal-1 is invalid.
Valid prediction for Augustus_model.g41174.t1
add_exon() Sorry, Augustus_model.g41174.t1 101-306-terminal-1 is invalid.
Couldn't classify 101, 287
Sorry, prediction GeneMark_model.107843_t fails validation.
(TGT)	 AG	101-287	GT	GGG
(GCT)	 AG	369-506	GC	GAG
(GAC)	 AG	536-610	GC	GAG
(CGA)	 AG	632-730	GC	GAG
(GGA)	 AG	1202-1348	GT	AGG
(AGG)	 AG	1375-1380	GC	GAG
(GGC)	 AG	1403-1510	GT	AGG
(AGA)	 AG	1542-1553	GT	GAG
(GAG)	 AG	1673-1798	GT	GAG
(AGA)	 AG	1824-1871	GT	GAG
(AAA)	 AG	1895-1954	GT	GAG
(AGT)	 AG	1978-2110	AA	GAA
-recovered GeneMark_model.107843_t, terminal, 1542, 1553
-recovered GeneMark_model.107843_t, terminal, 1978, 2110
-recovered GeneMark_model.107843_t, internal, 101, 287
-recovered GeneMark_model.107843_t, internal, 369, 506
-recovered GeneMark_model.107843_t, internal, 536, 610
-recovered GeneMark_model.107843_t, internal, 632, 730
-recovered GeneMark_model.107843_t, internal, 1202, 1348
-recovered GeneMark_model.107843_t, internal, 1375, 1380
-recovered GeneMark_model.107843_t, internal, 1403, 1510
-recovered GeneMark_model.107843_t, internal, 1542, 1553
-recovered GeneMark_model.107843_t, internal, 1673, 1798
-recovered GeneMark_model.107843_t, internal, 1824, 1871
-recovered GeneMark_model.107843_t, internal, 1895, 1954
Valid prediction for GeneMark_model.107841_t
Couldn't classify 101, 287
Sorry, prediction snap_scaffold_516-snap.1-T1 fails validation.
(TGT)	 AG	101-287	GT	GGG
(AGT)	 AG	983-1097	GT	CAG
(ATG)	 AG	3365-3379	TT	AAT
-recovered snap_scaffold_516-snap.1-T1, terminal, 3365, 3379
-recovered snap_scaffold_516-snap.1-T1, internal, 101, 287
-recovered snap_scaffold_516-snap.1-T1, internal, 983, 1097

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6152, rend_intergenic: 5168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6252
-exon list size: 63


building trellis

1.5    
3.1    
4.6    
6.2    
7.7    
9.2    
10.8    
12.3    
13.8    
15.4    
16.9    
18.5    
20.0    
21.5    
23.1    
24.6    
26.2    
27.7    
29.2    
30.8    
32.3    
33.8    
35.4    
36.9    
38.5    
40.0    
41.5    
43.1    
44.6    
46.2    
47.7    
49.2    
50.8    
52.3    
53.8    
55.4    
56.9    
58.5    
60.0    
61.5    
63.1    
64.6    
66.2    
67.7    
69.2    
70.8    
72.3    
73.8    
75.4    
76.9    
78.5    
80.0    
81.5    
83.1    
84.6    
86.2    
87.7    
89.2    
90.8    
92.3    
93.8    
95.4    
96.9    
98.5    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6152, rend_intergenic: 5168  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support