-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_515

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6047, 6074
Sorry, prediction GeneMark_model.107838_t fails validation.
(ATG)	 TG	3828-3838	GT	GTG
(AGA)	 AG	3993-4034	GT	GAG
(AAG)	 AG	4059-4067	GT	GAG
(AGA)	 AG	4092-4181	GT	CTG
(GAT)	 AG	5311-5388	GT	TTG
(GAT)	 AG	5966-6022	GT	AGG
(AGG)	 AG	6047-6074	GT	AGG
-recovered GeneMark_model.107838_t, initial, 3828, 3838
-recovered GeneMark_model.107838_t, internal, 3993, 4034
-recovered GeneMark_model.107838_t, internal, 4059, 4067
-recovered GeneMark_model.107838_t, internal, 4092, 4181
-recovered GeneMark_model.107838_t, internal, 5311, 5388
-recovered GeneMark_model.107838_t, internal, 5966, 6022
-recovered GeneMark_model.107838_t, internal, 6047, 6074
Couldn't classify 642, 686
Sorry, prediction GeneMark_model.107839_t fails validation.
(AGA)	 AG	642-686	GT	GAG
(AAA)	 AG	716-790	GT	CAG
(AGA)	 AG	822-840	GG	GAG
-recovered GeneMark_model.107839_t, terminal, 822, 840
-recovered GeneMark_model.107839_t, internal, 642, 686
-recovered GeneMark_model.107839_t, internal, 716, 790

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6258
-exon list size: 17


building trellis

5.3    
10.5    
15.8    
21.1    
26.3    
31.6    
36.8    
42.1    
47.4    
52.6    
57.9    
63.2    
68.4    
73.7    
78.9    
84.2    
89.5    
94.7    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 0 predictions persist after filtering for low support