-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_514

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)
-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 6062, 6179
Sorry, prediction Augustus_model.g41173.t1 fails validation.
(ATG)	 AT	216-338	GT	AGG
(GCA)	 AG	435-560	GT	AGG
(GTC)	 AG	3452-3529	GT	AGG
(ATG)	 AG	3649-3800	GT	AGG
(GTG)	 AG	4272-4317	GT	AGG
(GAG)	 AG	5432-5556	GT	AGG
(GTA)	 AG	6062-6179	GT	AGG
-recovered Augustus_model.g41173.t1, initial, 216, 338
-recovered Augustus_model.g41173.t1, initial, 3649, 3800
-recovered Augustus_model.g41173.t1, internal, 435, 560
-recovered Augustus_model.g41173.t1, internal, 3452, 3529
-recovered Augustus_model.g41173.t1, internal, 3649, 3800
-recovered Augustus_model.g41173.t1, internal, 4272, 4317
-recovered Augustus_model.g41173.t1, internal, 5432, 5556
-recovered Augustus_model.g41173.t1, internal, 6062, 6179
Couldn't classify 207, 338
Sorry, prediction GlimmerHMM_glimmerT_61945-T1 fails validation.
(GAG)	 AG	207-338	GT	AGG
(GCA)	 AG	435-560	GT	AGG
(GTC)	 AG	3452-3529	GT	AGG
(ATG)	 AG	3649-3816	GT	TGG
(GAG)	 AG	5432-5556	GT	AGG
(ACG)	 AG	6103-6226	CC	AAC
-recovered GlimmerHMM_glimmerT_61945-T1, initial, 3649, 3816
-recovered GlimmerHMM_glimmerT_61945-T1, terminal, 6103, 6226
-recovered GlimmerHMM_glimmerT_61945-T1, internal, 207, 338
-recovered GlimmerHMM_glimmerT_61945-T1, internal, 435, 560
-recovered GlimmerHMM_glimmerT_61945-T1, internal, 3452, 3529
-recovered GlimmerHMM_glimmerT_61945-T1, internal, 3649, 3816
-recovered GlimmerHMM_glimmerT_61945-T1, internal, 5432, 5556
Couldn't classify 207, 338
Couldn't classify 6062, 6179
Sorry, prediction GeneMark_model.107837_t fails validation.
(GAG)	 AG	207-338	GT	AGG
(GCA)	 AG	435-560	GT	AGG
(GTC)	 AG	3452-3529	GT	AGG
(ATG)	 AG	3649-3800	GT	AGG
(GTA)	 AG	6062-6179	GT	AGG
-recovered GeneMark_model.107837_t, initial, 3649, 3800
-recovered GeneMark_model.107837_t, internal, 207, 338
-recovered GeneMark_model.107837_t, internal, 435, 560
-recovered GeneMark_model.107837_t, internal, 3452, 3529
-recovered GeneMark_model.107837_t, internal, 3649, 3800
-recovered GeneMark_model.107837_t, internal, 6062, 6179
Couldn't classify 207, 338
Couldn't classify 6062, 6179
Sorry, prediction snap_scaffold_514-snap.1-T1 fails validation.
(GAG)	 AG	207-338	GT	AGG
(GCA)	 AG	435-560	GT	AGG
(GTC)	 AG	3452-3529	GT	AGG
(ATG)	 AG	3649-3800	GT	AGG
(GTG)	 AG	4272-4317	GT	AGG
(GAG)	 AG	5432-5556	GT	AGG
(GTA)	 AG	6062-6179	GT	AGG
-recovered snap_scaffold_514-snap.1-T1, initial, 3649, 3800
-recovered snap_scaffold_514-snap.1-T1, internal, 207, 338
-recovered snap_scaffold_514-snap.1-T1, internal, 435, 560
-recovered snap_scaffold_514-snap.1-T1, internal, 3452, 3529
-recovered snap_scaffold_514-snap.1-T1, internal, 3649, 3800
-recovered snap_scaffold_514-snap.1-T1, internal, 4272, 4317
-recovered snap_scaffold_514-snap.1-T1, internal, 5432, 5556
-recovered snap_scaffold_514-snap.1-T1, internal, 6062, 6179

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6261
-exon list size: 19


building trellis

4.8    
9.5    
14.3    
19.0    
23.8    
28.6    
33.3    
38.1    
42.9    
47.6    
52.4    
57.1    
61.9    
66.7    
71.4    
76.2    
81.0    
85.7    
90.5    
95.2    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support