-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_512

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 407, 462
Sorry, prediction GeneMark_model.107831_t fails validation.
(AGT)	 AG	407-462	GT	AGG
(GTG)	 AG	585-674	AC	AAA
-recovered GeneMark_model.107831_t, terminal, 585, 674
-recovered GeneMark_model.107831_t, internal, 407, 462
Couldn't classify 4220, 4298
Sorry, prediction GlimmerHMM_glimmerT_61944-T1 fails validation.
(ATG)	 AG	594-670	GT	AGG
(GAG)	 AG	4220-4298	GT	AGG
-recovered GlimmerHMM_glimmerT_61944-T1, initial, 594, 670
-recovered GlimmerHMM_glimmerT_61944-T1, internal, 594, 670
-recovered GlimmerHMM_glimmerT_61944-T1, internal, 4220, 4298
Valid prediction for GeneMark_model.107832_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_512-snap.1-T1
Valid prediction for GeneMark_model.107834_t
add_exon() Sorry, GeneMark_model.107834_t 157-298-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6298
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support