-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_511

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61943-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 5992, 6299
Sorry, prediction Augustus_model.g41172.t1 fails validation.
(ATG)	 AC	3932-3934	GT	TGG
(TCA)	 AG	4213-4542	GT	AGG
(GGT)	 AG	5753-5871	GT	CGG
(AGT)	 AG	5992-6299		CG
-recovered Augustus_model.g41172.t1, initial, 3932, 3934
-recovered Augustus_model.g41172.t1, internal, 4213, 4542
-recovered Augustus_model.g41172.t1, internal, 5753, 5871
Couldn't classify 5992, 6271
Sorry, prediction snap_scaffold_511-snap.1-T1 fails validation.
(ATG)	 GT	4258-4542	GT	AGG
(GGT)	 AG	5753-5871	GT	CGG
(AGT)	 AG	5992-6271	GT	GAG
-recovered snap_scaffold_511-snap.1-T1, initial, 4258, 4542
-recovered snap_scaffold_511-snap.1-T1, internal, 5753, 5871
-recovered snap_scaffold_511-snap.1-T1, internal, 5992, 6271
Valid prediction for GlimmerHMM_glimmerT_61942-T1
Couldn't classify 6260, 6281
Sorry, prediction GeneMark_model.107830_t fails validation.
(ATG)	 CA	1325-1363	GT	GAG
(TCA)	 AG	4213-4289	GT	GAG
(GTT)	 AG	4326-4542	GT	AGG
(GGT)	 AG	5753-5871	GT	CGG
(AGT)	 AG	5992-6228	GT	AGG
(ACT)	 AG	6260-6281	GT	ACG
-recovered GeneMark_model.107830_t, initial, 1325, 1363
-recovered GeneMark_model.107830_t, internal, 4213, 4289
-recovered GeneMark_model.107830_t, internal, 4326, 4542
-recovered GeneMark_model.107830_t, internal, 5753, 5871
-recovered GeneMark_model.107830_t, internal, 5992, 6228
-recovered GeneMark_model.107830_t, internal, 6260, 6281

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6299
-exon list size: 16


building trellis

5.6    
11.1    
16.7    
22.2    
27.8    
33.3    
38.9    
44.4    
50.0    
55.6    
61.1    
66.7    
72.2    
77.8    
83.3    
88.9    
94.4    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support