-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_510

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107828_t
Valid prediction for snap_scaffold_510-snap.1-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 4653, 4689
Sorry, prediction snap_scaffold_510-snap.2-T1 fails validation.
(ATG)	 AC	2967-3004	GT	AGG
(TGG)	 AG	3740-3760	GT	AAG
(GGC)	 AG	4149-4324	GT	CGG
(CTG)	 AG	4653-4689	GT	GAG
-recovered snap_scaffold_510-snap.2-T1, initial, 2967, 3004
-recovered snap_scaffold_510-snap.2-T1, internal, 3740, 3760
-recovered snap_scaffold_510-snap.2-T1, internal, 4149, 4324
-recovered snap_scaffold_510-snap.2-T1, internal, 4653, 4689
Valid prediction for Augustus_model.g41171.t1
Couldn't classify 4149, 4324
Sorry, prediction GlimmerHMM_glimmerT_61941-T1 fails validation.
(GGC)	 AG	4149-4324	GT	CGG
(CTG)	 AG	4653-4693	GT	GAG
-recovered GlimmerHMM_glimmerT_61941-T1, terminal, 4653, 4693
-recovered GlimmerHMM_glimmerT_61941-T1, internal, 4149, 4324
-recovered GlimmerHMM_glimmerT_61941-T1, internal, 4653, 4693

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 2147, rend_intergenic: 1649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6337
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 2147, rend_intergenic: 1649  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support