-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_51

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.106271_t
Valid prediction for GlimmerHMM_glimmerT_61064-T1
Valid prediction for snap_scaffold_51-snap.3-T1
Valid prediction for GeneMark_model.106270_t
Valid prediction for Augustus_model.g40620.t1
Valid prediction for snap_scaffold_51-snap.1-T1
Sorry, intron length (7) is less than minimum required (10)
Couldn't classify 28002, 28031
Sorry, prediction GeneMark_model.106274_t fails validation.
(ATG)	 AG	27227-27319	GT	GTG
(TTG)	 AG	27791-27876	GT	GAG
(GGG)	 AG	28002-28031	GT	GAG
-recovered GeneMark_model.106274_t, initial, 27227, 27319
-recovered GeneMark_model.106274_t, internal, 27227, 27319
-recovered GeneMark_model.106274_t, internal, 27791, 27876
-recovered GeneMark_model.106274_t, internal, 28002, 28031
Valid prediction for GeneMark_model.106273_t

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for snap_scaffold_51-snap.2-T1
Valid prediction for Augustus_model.g40621.t1
Valid prediction for Augustus_model.g40619.t1
Valid prediction for snap_scaffold_51-snap.5-T1
Valid prediction for GeneMark_model.106272_t
Valid prediction for snap_scaffold_51-snap.4-T1
Valid prediction for GlimmerHMM_glimmerT_61063-T1
Valid prediction for GlimmerHMM_glimmerT_61065-T1
Valid prediction for GeneMark_model.106269_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15146, rend_intergenic: 5640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19800, rend_intergenic: 16595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 28055
-exon list size: 80


building trellis

1.2    
2.4    
3.7    
4.9    
6.1    
7.3    
8.5    
9.8    
11.0    
12.2    
13.4    
14.6    
15.9    
17.1    
18.3    
19.5    
20.7    
22.0    
23.2    
24.4    
25.6    
26.8    
28.0    
29.3    
30.5    
31.7    
32.9    
34.1    
35.4    
36.6    
37.8    
39.0    
40.2    
41.5    
42.7    
43.9    
45.1    
46.3    
47.6    
48.8    
50.0    
51.2    
52.4    
53.7    
54.9    
56.1    
57.3    
58.5    
59.8    
61.0    
62.2    
63.4    
64.6    
65.9    
67.1    
68.3    
69.5    
70.7    
72.0    
73.2    
74.4    
75.6    
76.8    
78.0    
79.3    
80.5    
81.7    
82.9    
84.1    
85.4    
86.6    
87.8    
89.0    
90.2    
91.5    
92.7    
93.9    
95.1    
96.3    
97.6    
98.8    
-found 6 predictions from path traversal
Error with prediction: snap lend_intergenic: 15146, rend_intergenic: 5640  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 19800, rend_intergenic: 16595  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 3 predictions persist after filtering for low support