-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_509

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Couldn't classify 1954, 2151
Couldn't classify 5902, 6040
Sorry, prediction snap_scaffold_509-snap.2-T1 fails validation.
(TGG)	 AG	1954-2151	GT	GGG
(AGA)	 AG	2950-3106	GT	ATG
(TTC)	 AG	5902-6040	GT	GGG
-recovered snap_scaffold_509-snap.2-T1, internal, 1954, 2151
-recovered snap_scaffold_509-snap.2-T1, internal, 2950, 3106
-recovered snap_scaffold_509-snap.2-T1, internal, 5902, 6040

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Couldn't classify 319, 460
Couldn't classify 5198, 5353
Sorry, prediction Augustus_model.g41170.t1 fails validation.
(TAA)	 AG	319-460	GT	CCG
(CAG)	 AG	3371-3495	GT	AGG
(GGT)	 AG	4220-4406	GT	AGG
(CAG)	 AG	5198-5353	GT	CGG
-recovered Augustus_model.g41170.t1, internal, 319, 460
-recovered Augustus_model.g41170.t1, internal, 3371, 3495
-recovered Augustus_model.g41170.t1, internal, 4220, 4406
-recovered Augustus_model.g41170.t1, internal, 5198, 5353
Couldn't classify 50, 144
Sorry, prediction GeneMark_model.107827_t fails validation.
(ACT)	 AG	50-144	GT	CTG
(GTT)	 AG	328-417	GT	GAG
(ATA)	 AG	3352-3495	GT	AGG
(GGT)	 AG	4220-4406	GT	AGG
(CAG)	 AG	5198-5353	GT	CGG
(AGA)	 AG	5930-6205	AG	AAA
-recovered GeneMark_model.107827_t, terminal, 5930, 6205
-recovered GeneMark_model.107827_t, internal, 50, 144
-recovered GeneMark_model.107827_t, internal, 328, 417
-recovered GeneMark_model.107827_t, internal, 3352, 3495
-recovered GeneMark_model.107827_t, internal, 4220, 4406
-recovered GeneMark_model.107827_t, internal, 5198, 5353
Couldn't classify 319, 460
Couldn't classify 5201, 5353
Sorry, prediction snap_scaffold_509-snap.1-T1 fails validation.
(TAA)	 AG	319-460	GT	CCG
(CAG)	 AG	3371-3495	GT	AGG
(GGT)	 AG	4220-4406	GT	AGG
(GGA)	 AG	5201-5353	GT	CGG
-recovered snap_scaffold_509-snap.1-T1, internal, 319, 460
-recovered snap_scaffold_509-snap.1-T1, internal, 3371, 3495
-recovered snap_scaffold_509-snap.1-T1, internal, 4220, 4406
-recovered snap_scaffold_509-snap.1-T1, internal, 5201, 5353
Couldn't classify 319, 460
Sorry, prediction GlimmerHMM_glimmerT_61940-T1 fails validation.
(TAA)	 AG	319-460	GT	CCG
(CAG)	 AG	3371-3495	GT	AGG
(GGT)	 AG	4220-4481	GA	AGG
-recovered GlimmerHMM_glimmerT_61940-T1, terminal, 4220, 4481
-recovered GlimmerHMM_glimmerT_61940-T1, internal, 319, 460
-recovered GlimmerHMM_glimmerT_61940-T1, internal, 3371, 3495

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 6034, rend_intergenic: 1954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6352
-exon list size: 18


building trellis

5.0    
10.0    
15.0    
20.0    
25.0    
30.0    
35.0    
40.0    
45.0    
50.0    
55.0    
60.0    
65.0    
70.0    
75.0    
80.0    
85.0    
90.0    
95.0    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 6034, rend_intergenic: 1954  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support