-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_508

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107824_t
Couldn't classify 5979, 6078
Sorry, prediction GeneMark_model.107826_t fails validation.
(ATG)	 TC	2432-2478	GT	ACG
(GAG)	 AG	2786-2794	GT	AGG
(GAG)	 AG	2820-2828	GT	AGG
(AAG)	 AG	2854-2862	GT	AGG
(GAG)	 AG	5136-5171	GC	AGG
(ACA)	 AG	5979-6078	GT	TGG
-recovered GeneMark_model.107826_t, initial, 2432, 2478
-recovered GeneMark_model.107826_t, internal, 2786, 2794
-recovered GeneMark_model.107826_t, internal, 2820, 2828
-recovered GeneMark_model.107826_t, internal, 2854, 2862
-recovered GeneMark_model.107826_t, internal, 5136, 5171
-recovered GeneMark_model.107826_t, internal, 5979, 6078
Couldn't classify 2603, 2868
Sorry, prediction snap_scaffold_508-snap.1-T1 fails validation.
(GCC)	 AG	2603-2868	GT	AGG
(AGA)	 AG	5977-6096	AT	AGA
-recovered snap_scaffold_508-snap.1-T1, terminal, 5977, 6096
-recovered snap_scaffold_508-snap.1-T1, internal, 2603, 2868

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107825_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6365
-exon list size: 27


building trellis

3.4    
6.9    
10.3    
13.8    
17.2    
20.7    
24.1    
27.6    
31.0    
34.5    
37.9    
41.4    
44.8    
48.3    
51.7    
55.2    
58.6    
62.1    
65.5    
69.0    
72.4    
75.9    
79.3    
82.8    
86.2    
89.7    
93.1    
96.6    
-found 1 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support