-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_507

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_61936-T1
Couldn't classify 471, 611
Sorry, prediction GeneMark_model.107821_t fails validation.
(TGC)	 AG	471-611	GT	CGG
(ACC)	 AG	1140-1189	GT	TGG
(GAG)	 AG	1370-1396	CG	AGC
-recovered GeneMark_model.107821_t, terminal, 1370, 1396
-recovered GeneMark_model.107821_t, internal, 471, 611
-recovered GeneMark_model.107821_t, internal, 1140, 1189
Valid prediction for snap_scaffold_507-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61938-T1
Couldn't classify 50, 156
Sorry, prediction Augustus_model.g41168.t1 fails validation.
(GGT)	 AG	50-156	GT	ATG
(TGC)	 AG	471-611	GT	CGG
(ACC)	 AG	1140-1271	GT	GGG
(GAG)	 AG	1370-1498	GT	AGG
(GTT)	 AG	2009-2137	GT	AGG
(GTT)	 AG	3015-3143	GT	AGG
(AGC)	 AG	3550-3690	GT	CGG
(ACT)	 AG	4147-4226	GT	AGG
(GAG)	 AG	4346-4399	CC	GAC
-recovered Augustus_model.g41168.t1, terminal, 4346, 4399
-recovered Augustus_model.g41168.t1, internal, 50, 156
-recovered Augustus_model.g41168.t1, internal, 471, 611
-recovered Augustus_model.g41168.t1, internal, 1140, 1271
-recovered Augustus_model.g41168.t1, internal, 1370, 1498
-recovered Augustus_model.g41168.t1, internal, 2009, 2137
-recovered Augustus_model.g41168.t1, internal, 3015, 3143
-recovered Augustus_model.g41168.t1, internal, 3550, 3690
-recovered Augustus_model.g41168.t1, internal, 4147, 4226
Couldn't classify 6164, 6279
Sorry, prediction Augustus_model.g41169.t1 fails validation.
(ATG)	 CG	4891-4920	GT	GGG
(GAC)	 AG	6164-6279	GT	CGG
-recovered Augustus_model.g41169.t1, initial, 4891, 4920
-recovered Augustus_model.g41169.t1, internal, 6164, 6279
Valid prediction for GeneMark_model.107823_t
Couldn't classify 6164, 6279
Sorry, prediction GlimmerHMM_glimmerT_61939-T1 fails validation.
(ATG)	 CG	4891-4920	GT	GGG
(GAC)	 AG	6164-6279	GT	CGG
-recovered GlimmerHMM_glimmerT_61939-T1, initial, 4891, 4920
-recovered GlimmerHMM_glimmerT_61939-T1, internal, 6164, 6279

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.107822_t
Couldn't classify 6234, 6320
Sorry, prediction snap_scaffold_507-snap.1-T1 fails validation.
(ATG)	 AC	2076-2192	GT	TGG
(ACA)	 AG	2198-2656	GT	GAG
(TAC)	 AG	6234-6320	GT	CTG
-recovered snap_scaffold_507-snap.1-T1, initial, 2076, 2192
-recovered snap_scaffold_507-snap.1-T1, internal, 2198, 2656
-recovered snap_scaffold_507-snap.1-T1, internal, 6234, 6320
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GlimmerHMM_glimmerT_61937-T1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 4292, rend_intergenic: 78  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 3695, rend_intergenic: 3692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6367
-exon list size: 34


building trellis

2.8    
5.6    
8.3    
11.1    
13.9    
16.7    
19.4    
22.2    
25.0    
27.8    
30.6    
33.3    
36.1    
38.9    
41.7    
44.4    
47.2    
50.0    
52.8    
55.6    
58.3    
61.1    
63.9    
66.7    
69.4    
72.2    
75.0    
77.8    
80.6    
83.3    
86.1    
88.9    
91.7    
94.4    
97.2    
-found 2 predictions from path traversal
Error with prediction: snap lend_intergenic: 4292, rend_intergenic: 78  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: GlimmerHMM lend_intergenic: 3695, rend_intergenic: 3692  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support