-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_506

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107819_t
Valid prediction for HiQ_model.g41167.t1
Valid prediction for snap_scaffold_506-snap.2-T1
Valid prediction for GlimmerHMM_glimmerT_61935-T1
Valid prediction for GlimmerHMM_glimmerT_61933-T1
Valid prediction for GeneMark_model.107820_t
Valid prediction for snap_scaffold_506-snap.1-T1
Couldn't classify 47, 229
Sorry, prediction pasa_asmbl_46455.p1 fails validation.
(GGC)	 CA	47-229	GT	TGG
(GAG)	 AG	327-1209	GT	AAG
(AGC)	 AG	1331-1503	GT	AGG
(TTT)	 AG	1746-1875	GT	AGG
(GTC)	 AG	2280-2364	GT	AAG
(GCC)	 AG	2608-2658	GT	GTG
(GTT)	 AG	3029-3275	GT	AGG
(CAG)	 AG	4464-4586	CC	AAC
add_exon() Sorry, pasa_asmbl_46455.p1 1746-1875-terminal-3 is invalid.
-recovered pasa_asmbl_46455.p1, terminal, 1746, 1875
-recovered pasa_asmbl_46455.p1, terminal, 4464, 4586
-recovered pasa_asmbl_46455.p1, internal, 327, 1209
-recovered pasa_asmbl_46455.p1, internal, 1331, 1503
-recovered pasa_asmbl_46455.p1, internal, 1746, 1875
-recovered pasa_asmbl_46455.p1, internal, 2280, 2364
-recovered pasa_asmbl_46455.p1, internal, 2608, 2658
-recovered pasa_asmbl_46455.p1, internal, 3029, 3275
Valid prediction for GlimmerHMM_glimmerT_61934-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)
-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6375
-exon list size: 24


building trellis

3.8    
7.7    
11.5    
15.4    
19.2    
23.1    
26.9    
30.8    
34.6    
38.5    
42.3    
46.2    
50.0    
53.8    
57.7    
61.5    
65.4    
69.2    
73.1    
76.9    
80.8    
84.6    
88.5    
92.3    
96.2    
-found 2 predictions from path traversal

-reporting highest scoring path thru the trellis.
-found 2 predictions persist after filtering for low support