-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_505

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107818_t
Couldn't classify 261, 342
Couldn't classify 4992, 5131
Sorry, prediction snap_scaffold_505-snap.1-T1 fails validation.
(GGT)	 AG	261-342	GT	GGG
(CTC)	 AG	1810-1853	GT	CAG
(CTG)	 AG	3422-3593	GT	AGG
(GCG)	 AG	3686-3951	GT	AGG
(CCC)	 AG	4992-5131	GT	CCG
-recovered snap_scaffold_505-snap.1-T1, internal, 261, 342
-recovered snap_scaffold_505-snap.1-T1, internal, 1810, 1853
-recovered snap_scaffold_505-snap.1-T1, internal, 3422, 3593
-recovered snap_scaffold_505-snap.1-T1, internal, 3686, 3951
-recovered snap_scaffold_505-snap.1-T1, internal, 4992, 5131

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for Augustus_model.g41166.t1
Valid prediction for GeneMark_model.107817_t
Couldn't classify 3613, 3639
Couldn't classify 4929, 5073
Sorry, prediction pasa_asmbl_46454.p1 fails validation.
(TTC)	 CC	3613-3639	GT	AGG
(GTC)	 AG	3891-3939	GT	GGG
(ATG)	 AG	4289-4368	GT	AGG
(GAG)	 AG	4486-4592	GT	GGG
(GGC)	 AG	4929-5073	CT	ACC
add_exon() Sorry, pasa_asmbl_46454.p1 4289-4368-initial-1 is invalid.
-recovered pasa_asmbl_46454.p1, initial, 4289, 4368
-recovered pasa_asmbl_46454.p1, internal, 3891, 3939
-recovered pasa_asmbl_46454.p1, internal, 4289, 4368
-recovered pasa_asmbl_46454.p1, internal, 4486, 4592
Couldn't classify 922, 974
Couldn't classify 4929, 5028
Sorry, prediction snap_scaffold_505-snap.2-T1 fails validation.
(CAG)	 AG	922-974	GT	ATG
(GCG)	 AG	1195-1386	GT	TGG
(CAG)	 AG	2592-2739	GT	GGG
(CGT)	 AG	2842-2977	GT	CTG
(TCT)	 AG	3516-3639	GT	AGG
(GTC)	 AG	3891-3939	GT	GGG
(ATG)	 AG	4289-4368	GT	AGG
(GAG)	 AG	4486-4592	GT	GGG
(GGC)	 AG	4929-5028	GT	AGG
add_exon() Sorry, snap_scaffold_505-snap.2-T1 4289-4368-initial-1 is invalid.
-recovered snap_scaffold_505-snap.2-T1, initial, 4289, 4368
-recovered snap_scaffold_505-snap.2-T1, internal, 922, 974
-recovered snap_scaffold_505-snap.2-T1, internal, 1195, 1386
-recovered snap_scaffold_505-snap.2-T1, internal, 2592, 2739
-recovered snap_scaffold_505-snap.2-T1, internal, 2842, 2977
-recovered snap_scaffold_505-snap.2-T1, internal, 3516, 3639
-recovered snap_scaffold_505-snap.2-T1, internal, 3891, 3939
-recovered snap_scaffold_505-snap.2-T1, internal, 4289, 4368
-recovered snap_scaffold_505-snap.2-T1, internal, 4486, 4592
-recovered snap_scaffold_505-snap.2-T1, internal, 4929, 5028
Couldn't classify 1195, 1356
Sorry, prediction GlimmerHMM_glimmerT_61932-T1 fails validation.
(GCG)	 AG	1195-1356	GT	GGG
(CAG)	 AG	2592-2739	GT	GGG
(TGA)	 AG	2821-2977	GT	CTG
(TCT)	 AG	3516-3639	GT	AGG
(GTC)	 AG	3891-3939	GT	GGG
(ATG)	 AG	4289-4368	GT	AGG
(GAG)	 AG	4486-4592	GT	GGG
(GGC)	 AG	4929-5028	GT	AGG
(GAT)	 AG	6146-6202	TC	GAT
add_exon() Sorry, GlimmerHMM_glimmerT_61932-T1 4289-4368-initial-1 is invalid.
-recovered GlimmerHMM_glimmerT_61932-T1, initial, 4289, 4368
-recovered GlimmerHMM_glimmerT_61932-T1, terminal, 6146, 6202
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 1195, 1356
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 2592, 2739
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 2821, 2977
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 3516, 3639
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 3891, 3939
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 4289, 4368
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 4486, 4592
-recovered GlimmerHMM_glimmerT_61932-T1, internal, 4929, 5028

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 5131, rend_intergenic: 1369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 6396
-exon list size: 45


building trellis

2.1    
4.3    
6.4    
8.5    
10.6    
12.8    
14.9    
17.0    
19.1    
21.3    
23.4    
25.5    
27.7    
29.8    
31.9    
34.0    
36.2    
38.3    
40.4    
42.6    
44.7    
46.8    
48.9    
51.1    
53.2    
55.3    
57.4    
59.6    
61.7    
63.8    
66.0    
68.1    
70.2    
72.3    
74.5    
76.6    
78.7    
80.9    
83.0    
85.1    
87.2    
89.4    
91.5    
93.6    
95.7    
97.9    
-found 1 predictions from path traversal
Error with prediction: snap lend_intergenic: 5131, rend_intergenic: 1369  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support