-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_504

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.107815_t
Valid prediction for GlimmerHMM_glimmerT_61930-T1
add_exon() Sorry, GlimmerHMM_glimmerT_61930-T1 3472-3701-terminal-1 is invalid.

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_61931-T1
Couldn't classify 22, 96
Sorry, prediction GeneMark_model.107816_t fails validation.
(AGG)	 AG	22-96	GT	AGG
(AGC)	 AG	124-219	GT	ATG
(GGC)	 AG	563-634	GT	GTG
(GAA)	 AG	817-834	GT	AGG
(AGG)	 AG	855-887	GT	AGG
(GGG)	 AG	912-923	GT	AAG
(AGA)	 AG	1547-1610	TG	AAT
-recovered GeneMark_model.107816_t, terminal, 855, 887
-recovered GeneMark_model.107816_t, terminal, 1547, 1610
-recovered GeneMark_model.107816_t, internal, 22, 96
-recovered GeneMark_model.107816_t, internal, 124, 219
-recovered GeneMark_model.107816_t, internal, 563, 634
-recovered GeneMark_model.107816_t, internal, 817, 834
-recovered GeneMark_model.107816_t, internal, 855, 887
-recovered GeneMark_model.107816_t, internal, 912, 923
Valid prediction for Augustus_model.g41165.t1
Valid prediction for snap_scaffold_504-snap.1-T1
Couldn't classify 6373, 6402
Sorry, prediction GeneMark_model.107814_t fails validation.
(ATG)	 GG	3386-3426	GT	GAG
(AGA)	 AG	6232-6246	GT	GGG
(AAA)	 AG	6272-6316	GT	GGG
(GGA)	 AG	6373-6402	GC	ATG
-recovered GeneMark_model.107814_t, initial, 3386, 3426
-recovered GeneMark_model.107814_t, internal, 6232, 6246
-recovered GeneMark_model.107814_t, internal, 6272, 6316
-recovered GeneMark_model.107814_t, internal, 6373, 6402

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)
-building DP trellis

-building trellis in range 1 - 6421
-exon list size: 32


building trellis

2.9    
5.9    
8.8    
11.8    
14.7    
17.6    
20.6    
23.5    
26.5    
29.4    
32.4    
35.3    
38.2    
41.2    
44.1    
47.1    
50.0    
52.9    
55.9    
58.8    
61.8    
64.7    
67.6    
70.6    
73.5    
76.5    
79.4    
82.4    
85.3    
88.2    
91.2    
94.1    
97.1    
-found 1 predictions from path traversal
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 1 predictions persist after filtering for low support