-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_9805837-10049645

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GeneMark_model.21614_t
Valid prediction for GeneMark_model.21629_t
Valid prediction for GlimmerHMM_glimmerT_12744-T1
Valid prediction for snap_scaffold_5-snap.1858-T1
Valid prediction for snap_scaffold_5-snap.1860-T1
Valid prediction for GeneMark_model.21613_t
Valid prediction for GlimmerHMM_glimmerT_12771-T1
Valid prediction for GlimmerHMM_glimmerT_12733-T1
Valid prediction for Augustus_model.g8454.t1
Valid prediction for GeneMark_model.21599_t
Valid prediction for snap_scaffold_5-snap.1889-T1
Valid prediction for snap_scaffold_5-snap.1854-T1
Valid prediction for GeneMark_model.21604_t
Valid prediction for GeneMark_model.21557_t
Valid prediction for snap_scaffold_5-snap.1880-T1
Couldn't classify 30123, 30259
Couldn't classify 33114, 33229
Sorry, prediction pasa_asmbl_44318.p1 fails validation.
(CCT)	 TC	30123-30259	GT	AGG
(GCT)	 AG	30357-30450	GT	GGG
(TCC)	 AG	30708-30777	GT	GGG
(AGA)	 AG	30931-31070	GT	AGG
(GTG)	 AG	31512-31588	GT	GGG
(ACC)	 AG	31941-32008	GT	AGG
(CGG)	 AG	32270-32347	GT	CGG
(AGT)	 AG	32499-32633	GT	CGG
(GTG)	 AG	32799-32966	GT	AAG
(ACA)	 AG	33114-33229	CC	TCC
-recovered pasa_asmbl_44318.p1, internal, 30357, 30450
-recovered pasa_asmbl_44318.p1, internal, 30708, 30777
-recovered pasa_asmbl_44318.p1, internal, 30931, 31070
-recovered pasa_asmbl_44318.p1, internal, 31512, 31588
-recovered pasa_asmbl_44318.p1, internal, 31941, 32008
-recovered pasa_asmbl_44318.p1, internal, 32270, 32347
-recovered pasa_asmbl_44318.p1, internal, 32499, 32633
-recovered pasa_asmbl_44318.p1, internal, 32799, 32966
Valid prediction for Augustus_model.g8472.t1
Valid prediction for snap_scaffold_5-snap.1872-T1
Valid prediction for GeneMark_model.21591_t
Valid prediction for snap_scaffold_5-snap.1901-T1
Valid prediction for GeneMark_model.21583_t
Valid prediction for Augustus_model.g8469.t1
Valid prediction for GlimmerHMM_glimmerT_12753-T1
Valid prediction for GeneMark_model.21589_t
Valid prediction for snap_scaffold_5-snap.1882-T1
Valid prediction for CodingQuarry_transcript_52070-T1
Valid prediction for snap_scaffold_5-snap.1870-T1
Valid prediction for pasa_asmbl_44312.p1
Valid prediction for Augustus_model.g8455.t1
Valid prediction for Augustus_model.g8453.t1
Valid prediction for GeneMark_model.21562_t
Valid prediction for GlimmerHMM_glimmerT_12768-T1
Valid prediction for GeneMark_model.21554_t
Valid prediction for GeneMark_model.21581_t
Valid prediction for GlimmerHMM_glimmerT_12770-T1
Valid prediction for GlimmerHMM_glimmerT_12754-T1
Valid prediction for GeneMark_model.21595_t
Valid prediction for Augustus_model.g8474.t1
Valid prediction for pasa_asmbl_44316.p1
Valid prediction for GlimmerHMM_glimmerT_12736-T1
Valid prediction for Augustus_model.g8468.t1
Valid prediction for GeneMark_model.21572_t
Valid prediction for GeneMark_model.21601_t
Valid prediction for snap_scaffold_5-snap.1907-T1
Valid prediction for snap_scaffold_5-snap.1894-T1
Valid prediction for GeneMark_model.21555_t
Valid prediction for GlimmerHMM_glimmerT_12764-T1
Valid prediction for GeneMark_model.21551_t
Valid prediction for snap_scaffold_5-snap.1865-T1
Valid prediction for GeneMark_model.21560_t
Valid prediction for GlimmerHMM_glimmerT_12734-T1
Valid prediction for GeneMark_model.21606_t
Valid prediction for GeneMark_model.21574_t
Valid prediction for snap_scaffold_5-snap.1857-T1
Valid prediction for snap_scaffold_5-snap.1883-T1
Valid prediction for GlimmerHMM_glimmerT_12758-T1
Valid prediction for Augustus_model.g8482.t1
Valid prediction for snap_scaffold_5-snap.1895-T1
Valid prediction for GeneMark_model.21619_t
Valid prediction for GlimmerHMM_glimmerT_12757-T1
Valid prediction for snap_scaffold_5-snap.1885-T1
Valid prediction for Augustus_model.g8475.t1
Valid prediction for snap_scaffold_5-snap.1888-T1
Valid prediction for GeneMark_model.21617_t
Valid prediction for Augustus_model.g8465.t1
Valid prediction for GeneMark_model.21552_t
Valid prediction for GeneMark_model.21568_t
Valid prediction for snap_scaffold_5-snap.1868-T1
Valid prediction for snap_scaffold_5-snap.1876-T1
Valid prediction for snap_scaffold_5-snap.1856-T1
Valid prediction for GeneMark_model.21627_t
Valid prediction for HiQ_model.g8452.t1
Valid prediction for GeneMark_model.21607_t
Valid prediction for GlimmerHMM_glimmerT_12751-T1
Valid prediction for GeneMark_model.21621_t
Valid prediction for GeneMark_model.21586_t
Valid prediction for GeneMark_model.21623_t
Valid prediction for CodingQuarry_transcript_52069-T1
Valid prediction for GeneMark_model.21567_t
Valid prediction for GeneMark_model.21558_t
Valid prediction for snap_scaffold_5-snap.1869-T1
Valid prediction for GlimmerHMM_glimmerT_12748-T1
Valid prediction for GeneMark_model.21597_t
Valid prediction for snap_scaffold_5-snap.1862-T1
Valid prediction for Augustus_model.g8458.t1
Valid prediction for GeneMark_model.21630_t
Valid prediction for GeneMark_model.21576_t
Valid prediction for GlimmerHMM_glimmerT_12762-T1
Valid prediction for GlimmerHMM_glimmerT_12773-T1
Valid prediction for GlimmerHMM_glimmerT_12749-T1
Valid prediction for GlimmerHMM_glimmerT_12746-T1
Valid prediction for GeneMark_model.21588_t
Valid prediction for GeneMark_model.21625_t
Valid prediction for GeneMark_model.21611_t
Valid prediction for GeneMark_model.21570_t
Valid prediction for Augustus_model.g8462.t1
Valid prediction for snap_scaffold_5-snap.1877-T1
Valid prediction for snap_scaffold_5-snap.1875-T1
Valid prediction for GlimmerHMM_glimmerT_12743-T1
Valid prediction for GeneMark_model.21563_t
Valid prediction for GlimmerHMM_glimmerT_12765-T1
Valid prediction for snap_scaffold_5-snap.1892-T1
Valid prediction for GlimmerHMM_glimmerT_12767-T1
Valid prediction for GeneMark_model.21582_t
Valid prediction for snap_scaffold_5-snap.1906-T1
Valid prediction for GeneMark_model.21577_t
Valid prediction for snap_scaffold_5-snap.1863-T1
Valid prediction for GeneMark_model.21571_t
Valid prediction for snap_scaffold_5-snap.1853-T1
Valid prediction for snap_scaffold_5-snap.1891-T1
Valid prediction for snap_scaffold_5-snap.1898-T1
Valid prediction for snap_scaffold_5-snap.1866-T1
Valid prediction for GeneMark_model.21609_t
Valid prediction for Augustus_model.g8473.t1
Valid prediction for GeneMark_model.21565_t
Couldn't classify 41591, 41615
Sorry, prediction pasa_asmbl_44320.p1 fails validation.
(GTC)	 AT	41591-41615	GT	AGG
(GGA)	 AG	42173-42292	GT	AGG
(GGG)	 AG	42778-42915	GT	CCG
(GAT)	 AG	43250-43322	GT	AGG
(CTG)	 AG	43414-43544	GT	AGG
(AAA)	 AG	43656-43805	GT	AGG
(ATG)	 AG	44020-44153	AG	AAA
-recovered pasa_asmbl_44320.p1, terminal, 44020, 44153
-recovered pasa_asmbl_44320.p1, internal, 42173, 42292
-recovered pasa_asmbl_44320.p1, internal, 42778, 42915
-recovered pasa_asmbl_44320.p1, internal, 43250, 43322
-recovered pasa_asmbl_44320.p1, internal, 43414, 43544
-recovered pasa_asmbl_44320.p1, internal, 43656, 43805
Valid prediction for snap_scaffold_5-snap.1893-T1
Valid prediction for Augustus_model.g8464.t1
Valid prediction for GeneMark_model.21603_t
Valid prediction for GlimmerHMM_glimmerT_12760-T1
Valid prediction for GeneMark_model.21593_t
Valid prediction for GlimmerHMM_glimmerT_12750-T1
Valid prediction for snap_scaffold_5-snap.1903-T1
Valid prediction for GlimmerHMM_glimmerT_12756-T1
Valid prediction for GlimmerHMM_glimmerT_12755-T1
Valid prediction for Augustus_model.g8461.t1
Valid prediction for Augustus_model.g8479.t1
Valid prediction for GeneMark_model.21579_t
Valid prediction for GeneMark_model.21573_t
Valid prediction for GeneMark_model.21561_t
Valid prediction for GeneMark_model.21585_t
Valid prediction for snap_scaffold_5-snap.1855-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GlimmerHMM_glimmerT_12737-T1
Valid prediction for GeneMark_model.21559_t
Valid prediction for snap_scaffold_5-snap.1887-T1
Valid prediction for GlimmerHMM_glimmerT_12740-T1
Valid prediction for GlimmerHMM_glimmerT_12763-T1
Valid prediction for GeneMark_model.21616_t
Valid prediction for Augustus_model.g8463.t1
Valid prediction for snap_scaffold_5-snap.1867-T1
Valid prediction for GeneMark_model.21569_t
Valid prediction for GeneMark_model.21602_t
Valid prediction for GeneMark_model.21580_t
Valid prediction for Augustus_model.g8456.t1
Valid prediction for GlimmerHMM_glimmerT_12772-T1
Valid prediction for snap_scaffold_5-snap.1896-T1
Valid prediction for GlimmerHMM_glimmerT_12745-T1
Valid prediction for Augustus_model.g8460.t1
Valid prediction for GeneMark_model.21596_t
Valid prediction for GeneMark_model.21566_t
Valid prediction for snap_scaffold_5-snap.1884-T1
Valid prediction for GeneMark_model.21553_t
Valid prediction for GeneMark_model.21631_t
Valid prediction for snap_scaffold_5-snap.1878-T1
Valid prediction for snap_scaffold_5-snap.1874-T1
Valid prediction for snap_scaffold_5-snap.1905-T1
Valid prediction for Augustus_model.g8466.t1
Valid prediction for snap_scaffold_5-snap.1859-T1
Valid prediction for GeneMark_model.21600_t
Valid prediction for GeneMark_model.21584_t
Valid prediction for GeneMark_model.21610_t
Valid prediction for GeneMark_model.21618_t
Valid prediction for GlimmerHMM_glimmerT_12739-T1
Valid prediction for GeneMark_model.21624_t
Valid prediction for Augustus_model.g8457.t1
Valid prediction for GeneMark_model.21590_t
Valid prediction for snap_scaffold_5-snap.1902-T1
Valid prediction for GlimmerHMM_glimmerT_12735-T1
Valid prediction for snap_scaffold_5-snap.1879-T1
Valid prediction for Augustus_model.g8483.t1
Valid prediction for Augustus_model.g8477.t1
Valid prediction for GlimmerHMM_glimmerT_12747-T1
Valid prediction for GlimmerHMM_glimmerT_12761-T1
Valid prediction for GeneMark_model.21628_t
Valid prediction for snap_scaffold_5-snap.1881-T1
Valid prediction for GeneMark_model.21556_t
Valid prediction for snap_scaffold_5-snap.1871-T1
Valid prediction for GlimmerHMM_glimmerT_12738-T1
Valid prediction for CodingQuarry_transcript_52072-T1
Valid prediction for snap_scaffold_5-snap.1890-T1
Valid prediction for Augustus_model.g8471.t1
Valid prediction for GeneMark_model.21612_t
Valid prediction for Augustus_model.g8476.t1
Valid prediction for Augustus_model.g8478.t1
Valid prediction for GlimmerHMM_glimmerT_12742-T1
Valid prediction for Augustus_model.g8481.t1
Valid prediction for GlimmerHMM_glimmerT_12769-T1
Valid prediction for snap_scaffold_5-snap.1897-T1
Valid prediction for GeneMark_model.21564_t
Valid prediction for GlimmerHMM_glimmerT_12741-T1
Valid prediction for snap_scaffold_5-snap.1861-T1
Valid prediction for GeneMark_model.21626_t
Valid prediction for Augustus_model.g8480.t1
Valid prediction for snap_scaffold_5-snap.1904-T1
Valid prediction for GeneMark_model.21598_t
Valid prediction for GeneMark_model.21575_t
Valid prediction for GeneMark_model.21578_t
Valid prediction for snap_scaffold_5-snap.1864-T1
Couldn't classify 188481, 188535
Couldn't classify 192550, 192627
Sorry, prediction pasa_asmbl_45689.p1 fails validation.
(TGT)	 AG	188481-188535	GT	GAG
(TTG)	 AG	188609-188747	GT	ATG
(TGA)	 AG	189510-189603	GT	AGG
(GAA)	 AG	192550-192627	GG	ACG
-recovered pasa_asmbl_45689.p1, internal, 188481, 188535
-recovered pasa_asmbl_45689.p1, internal, 188609, 188747
-recovered pasa_asmbl_45689.p1, internal, 189510, 189603
Valid prediction for snap_scaffold_5-snap.1899-T1
Valid prediction for GeneMark_model.21608_t
Valid prediction for GeneMark_model.21605_t
Valid prediction for GlimmerHMM_glimmerT_12766-T1
Valid prediction for GlimmerHMM_glimmerT_12752-T1
Valid prediction for snap_scaffold_5-snap.1873-T1
Valid prediction for GlimmerHMM_glimmerT_12759-T1
Couldn't classify 195428, 195490
Sorry, prediction pasa_asmbl_45687.p1 fails validation.
(GTC)	 AG	195428-195490	GT	GGG
(AGT)	 AG	195661-195738	GT	AGG
(GAA)	 AG	195845-195976	GT	AGG
(AGG)	 AG	196077-196165	GT	CTG
(ACA)	 AG	196268-196368	GT	AGG
(GCT)	 AG	196441-196592	CA	GAC
-recovered pasa_asmbl_45687.p1, terminal, 196441, 196592
-recovered pasa_asmbl_45687.p1, internal, 195428, 195490
-recovered pasa_asmbl_45687.p1, internal, 195661, 195738
-recovered pasa_asmbl_45687.p1, internal, 195845, 195976
-recovered pasa_asmbl_45687.p1, internal, 196077, 196165
-recovered pasa_asmbl_45687.p1, internal, 196268, 196368
Valid prediction for GeneMark_model.21622_t
Valid prediction for snap_scaffold_5-snap.1886-T1
Valid prediction for snap_scaffold_5-snap.1900-T1
Valid prediction for GeneMark_model.21592_t
Valid prediction for GeneMark_model.21620_t
Valid prediction for GeneMark_model.21587_t
Valid prediction for GeneMark_model.21594_t
Valid prediction for Augustus_model.g8459.t1
Valid prediction for Augustus_model.g8467.t1
Valid prediction for GlimmerHMM_glimmerT_12774-T1
Valid prediction for Augustus_model.g8470.t1

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 26255, rend_intergenic: 23707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37887, rend_intergenic: 32795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60857, rend_intergenic: 48705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78641, rend_intergenic: 72764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92342, rend_intergenic: 89175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93650, rend_intergenic: 92394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101129, rend_intergenic: 93819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124573, rend_intergenic: 101154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130946, rend_intergenic: 127792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135511, rend_intergenic: 134555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141732, rend_intergenic: 136306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149159, rend_intergenic: 143007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150552, rend_intergenic: 149209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156192, rend_intergenic: 155140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159940, rend_intergenic: 157219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165291, rend_intergenic: 161327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170448, rend_intergenic: 168732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200634, rend_intergenic: 170706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204982, rend_intergenic: 202527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212285, rend_intergenic: 206833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216544, rend_intergenic: 212442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224870, rend_intergenic: 224372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226963, rend_intergenic: 225010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230918, rend_intergenic: 227358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 243809
-exon list size: 1129


building trellis

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27.0    
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27.1    
27.2    
27.3    
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27.8    
27.9    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.4    
29.5    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.7    
31.8    
31.9    
32.0    
32.1    
32.2    
32.3    
32.4    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.6    
34.7    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.0    
37.1    
37.2    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.3    
39.4    
39.5    
39.6    
39.7    
39.8    
39.9    
40.0    
40.1    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.3    
42.4    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.7    
44.8    
44.9    
45.0    
45.1    
45.2    
45.3    
45.4    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
46.9    
47.0    
47.1    
47.2    
47.3    
47.4    
47.5    
47.6    
47.7    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.0    
50.0    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.3    
52.4    
52.5    
52.6    
52.7    
52.8    
52.9    
53.0    
53.1    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.6    
54.7    
54.8    
54.9    
55.0    
55.1    
55.2    
55.3    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.6    
57.7    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
59.9    
60.0    
60.1    
60.2    
60.3    
60.4    
60.5    
60.6    
60.7    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.8    
62.9    
63.0    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.3    
65.4    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.6    
67.7    
67.8    
67.9    
68.0    
68.1    
68.2    
68.3    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.5    
70.6    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
72.9    
73.0    
73.1    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.2    
75.3    
75.4    
75.5    
75.6    
75.7    
75.8    
75.9    
76.0    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.2    
78.2    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.5    
80.6    
80.7    
80.8    
80.9    
81.0    
81.1    
81.2    
81.3    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.8    
82.9    
83.0    
83.1    
83.2    
83.3    
83.4    
83.5    
83.6    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
85.9    
85.9    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.2    
88.3    
88.4    
88.5    
88.6    
88.7    
88.8    
88.9    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.5    
90.6    
90.7    
90.8    
90.9    
91.0    
91.1    
91.2    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.5    
93.6    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.8    
95.9    
96.0    
96.1    
96.2    
96.3    
96.4    
96.5    
96.6    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.7    
98.8    
98.9    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.6    
99.7    
99.8    
99.9    
-found 62 predictions from path traversal
Error with prediction: snap lend_intergenic: 26255, rend_intergenic: 23707  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 37887, rend_intergenic: 32795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 60857, rend_intergenic: 48705  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 78641, rend_intergenic: 72764  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 92342, rend_intergenic: 89175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 93650, rend_intergenic: 92394  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 101129, rend_intergenic: 93819  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 124573, rend_intergenic: 101154  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130946, rend_intergenic: 127792  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 135511, rend_intergenic: 134555  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 141732, rend_intergenic: 136306  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149159, rend_intergenic: 143007  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 150552, rend_intergenic: 149209  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 156192, rend_intergenic: 155140  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 159940, rend_intergenic: 157219  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 165291, rend_intergenic: 161327  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 170448, rend_intergenic: 168732  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 200634, rend_intergenic: 170706  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 204982, rend_intergenic: 202527  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 212285, rend_intergenic: 206833  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 216544, rend_intergenic: 212442  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 224870, rend_intergenic: 224372  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 226963, rend_intergenic: 225010  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 230918, rend_intergenic: 227358  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 25 predictions persist after filtering for low support