-successfully changed directories to /suikou/files/m256y/yoshitake.kazutoshi/work/pp-dev/yoshitake/test/annotation~Funannotate/fun/predict_misc/EVM/scaffold_5/scaffold_5_857744-1117812

-reading genomic sequence.

** Processing features (+)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: +)
-loading gene prediction evidence. (strand: +)Valid prediction for GlimmerHMM_glimmerT_11667-T1
Valid prediction for GlimmerHMM_glimmerT_11661-T1
Valid prediction for GeneMark_model.19430_t
Valid prediction for GeneMark_model.19443_t
Valid prediction for snap_scaffold_5-snap.184-T1
Valid prediction for GlimmerHMM_glimmerT_11664-T1
Couldn't classify 41772, 42009
Sorry, prediction GeneMark_model.19419_t fails validation.
(GTG)	 AG	41772-42009	GT	AGG
(TCA)	 AG	43057-43072	GT	GGG
(CTC)	 AG	43123-43158	GT	ATG
(GAG)	 AG	43183-43212	GT	GGG
(GAG)	 AG	43352-43714	GT	GAG
(GGG)	 AG	43773-43817	GT	AAG
(GAG)	 AG	43863-43997	GT	AGG
(GAG)	 AG	44021-44120	AG	GAA
add_exon() Sorry, GeneMark_model.19419_t 41772-42009-terminal-3 is invalid.
-recovered GeneMark_model.19419_t, terminal, 41772, 42009
-recovered GeneMark_model.19419_t, terminal, 44021, 44120
-recovered GeneMark_model.19419_t, internal, 41772, 42009
-recovered GeneMark_model.19419_t, internal, 43057, 43072
-recovered GeneMark_model.19419_t, internal, 43123, 43158
-recovered GeneMark_model.19419_t, internal, 43183, 43212
-recovered GeneMark_model.19419_t, internal, 43352, 43714
-recovered GeneMark_model.19419_t, internal, 43773, 43817
-recovered GeneMark_model.19419_t, internal, 43863, 43997
Valid prediction for GeneMark_model.19434_t
Valid prediction for Augustus_model.g7669.t1
Valid prediction for snap_scaffold_5-snap.191-T1
Valid prediction for GlimmerHMM_glimmerT_11675-T1
Valid prediction for snap_scaffold_5-snap.181-T1
Valid prediction for GlimmerHMM_glimmerT_11662-T1
Valid prediction for snap_scaffold_5-snap.220-T1
Valid prediction for GlimmerHMM_glimmerT_11658-T1
Valid prediction for GlimmerHMM_glimmerT_11665-T1
Valid prediction for snap_scaffold_5-snap.224-T1
Valid prediction for Augustus_model.g7671.t1
Valid prediction for GeneMark_model.19437_t
Valid prediction for GlimmerHMM_glimmerT_11660-T1
Valid prediction for GeneMark_model.19426_t
Valid prediction for GeneMark_model.19414_t
Couldn't classify 137312, 137429
Sorry, prediction pasa_asmbl_43772.p1 fails validation.
(ATG)	 CG	133294-133434	GT	AGG
(CTG)	 AG	134537-134682	GT	AGG
(CAC)	 AG	136054-136129	GT	AGG
(AGG)	 AG	136554-136693	GT	AGG
(ACA)	 AG	137312-137429	TG	GGT
-recovered pasa_asmbl_43772.p1, initial, 133294, 133434
-recovered pasa_asmbl_43772.p1, internal, 134537, 134682
-recovered pasa_asmbl_43772.p1, internal, 136054, 136129
-recovered pasa_asmbl_43772.p1, internal, 136554, 136693
Valid prediction for snap_scaffold_5-snap.180-T1
Valid prediction for GeneMark_model.19416_t
Valid prediction for GeneMark_model.19425_t
Couldn't classify 185680, 185722
Couldn't classify 191328, 191371
Sorry, prediction pasa_asmbl_43777.p1 fails validation.
(GCC)	 AT	185680-185722	GT	AGG
(AGC)	 AG	185860-185988	GT	CGG
(GAG)	 AG	187732-187899	GT	AGG
(CCC)	 AG	187982-188101	GT	AGG
(GTC)	 AG	188500-188664	GT	GGG
(GTG)	 AG	190851-191009	GT	GAG
(GGA)	 AG	191328-191371	CC	GCC
-recovered pasa_asmbl_43777.p1, terminal, 187732, 187899
-recovered pasa_asmbl_43777.p1, internal, 185860, 185988
-recovered pasa_asmbl_43777.p1, internal, 187732, 187899
-recovered pasa_asmbl_43777.p1, internal, 187982, 188101
-recovered pasa_asmbl_43777.p1, internal, 188500, 188664
-recovered pasa_asmbl_43777.p1, internal, 190851, 191009
Valid prediction for GlimmerHMM_glimmerT_11676-T1
Valid prediction for GeneMark_model.19452_t
Valid prediction for GlimmerHMM_glimmerT_11663-T1
Valid prediction for GeneMark_model.19468_t
Valid prediction for snap_scaffold_5-snap.186-T1
Valid prediction for GeneMark_model.19439_t
Valid prediction for snap_scaffold_5-snap.188-T1
Valid prediction for Augustus_model.g7682.t1
Valid prediction for GeneMark_model.19465_t
Valid prediction for GeneMark_model.19461_t
Valid prediction for GeneMark_model.19441_t
Valid prediction for GeneMark_model.19475_t
Valid prediction for snap_scaffold_5-snap.179-T1
Valid prediction for GeneMark_model.19453_t
Valid prediction for snap_scaffold_5-snap.200-T1
Sorry, intron length (4) is less than minimum required (10)
Valid prediction for GeneMark_model.19471_t
Valid prediction for GeneMark_model.19412_t
Valid prediction for GeneMark_model.19423_t
Valid prediction for GeneMark_model.19421_t
Valid prediction for snap_scaffold_5-snap.178-T1
Valid prediction for GeneMark_model.19457_t
Valid prediction for Augustus_model.g7674.t1
Valid prediction for snap_scaffold_5-snap.202-T1
Valid prediction for GeneMark_model.19432_t
Valid prediction for snap_scaffold_5-snap.206-T1
Valid prediction for GeneMark_model.19462_t
Valid prediction for snap_scaffold_5-snap.177-T1
Valid prediction for GeneMark_model.19410_t
Valid prediction for GeneMark_model.19459_t
Valid prediction for GeneMark_model.19436_t
Valid prediction for GeneMark_model.19455_t
Valid prediction for snap_scaffold_5-snap.222-T1
Couldn't classify 14158, 14299
Couldn't classify 15149, 15288
Sorry, prediction pasa_asmbl_45052.p1 fails validation.
(GGT)	 TT	14158-14299	GT	AGG
(GCT)	 AG	14620-14838	GT	TGG
(GCT)	 AG	15149-15288	CT	GGC
-recovered pasa_asmbl_45052.p1, internal, 14620, 14838
Valid prediction for GlimmerHMM_glimmerT_11669-T1
Couldn't classify 138313, 138510
Sorry, prediction pasa_asmbl_43776.p1 fails validation.
(CAG)	 TG	138313-138510	GT	CGG
(GGT)	 AG	139435-139516	GT	AGG
(GCA)	 AG	140044-140233	GT	AGG
(GCA)	 AG	140438-140561	GC	GAG
-recovered pasa_asmbl_43776.p1, terminal, 140438, 140561
-recovered pasa_asmbl_43776.p1, internal, 139435, 139516
-recovered pasa_asmbl_43776.p1, internal, 140044, 140233
-recovered pasa_asmbl_43776.p1, internal, 140438, 140561
Valid prediction for snap_scaffold_5-snap.211-T1
Valid prediction for GeneMark_model.19449_t
Valid prediction for GeneMark_model.19445_t
Valid prediction for snap_scaffold_5-snap.194-T1
Valid prediction for GeneMark_model.19435_t
Valid prediction for snap_scaffold_5-snap.198-T1
Valid prediction for Augustus_model.g7685.t1
Valid prediction for GlimmerHMM_glimmerT_11681-T1
Valid prediction for GeneMark_model.19440_t
Couldn't classify 197446, 197553
Couldn't classify 199372, 199490
Sorry, prediction pasa_asmbl_45066.p1 fails validation.
(GTG)	 GT	197446-197553	GT	TGG
(GTG)	 AG	197881-198010	GT	TGG
(CCA)	 AG	198712-198828	GT	AGG
(ACA)	 AG	199372-199490	GT	GCG
-recovered pasa_asmbl_45066.p1, internal, 197881, 198010
-recovered pasa_asmbl_45066.p1, internal, 198712, 198828
-recovered pasa_asmbl_45066.p1, internal, 199372, 199490
Valid prediction for GeneMark_model.19472_t
Valid prediction for GeneMark_model.19447_t
Valid prediction for snap_scaffold_5-snap.213-T1
Valid prediction for snap_scaffold_5-snap.217-T1
Valid prediction for GeneMark_model.19408_t
Valid prediction for GeneMark_model.19464_t
Valid prediction for snap_scaffold_5-snap.204-T1
Valid prediction for GeneMark_model.19428_t
Valid prediction for snap_scaffold_5-snap.189-T1
Valid prediction for GeneMark_model.19418_t
Valid prediction for snap_scaffold_5-snap.208-T1
Valid prediction for snap_scaffold_5-snap.193-T1

-loading the search evidence (protein and EST search results, strand: +)
-scoring exons (strand: +)

** Processing features (-)

-finding all potential splice sites, looking for GT/GC donors and AG acceptors.
-finding all potential starts and stops. (strand: -)
-loading gene prediction evidence. (strand: -)Valid prediction for GeneMark_model.19424_t
Valid prediction for CodingQuarry_transcript_51849-T1
Couldn't classify 52977, 53075
Sorry, prediction pasa_asmbl_45206.p1 fails validation.
(CTC)	 GC	52977-53075	GT	ATG
(CAG)	 AG	53600-53758	GT	ACG
(GGT)	 AG	54119-54294	GT	AGG
(GCC)	 AG	54870-55041	GT	AGG
(GAC)	 AG	55446-55537	GT	AGG
(GAT)	 AG	55679-55733	TG	GAT
-recovered pasa_asmbl_45206.p1, terminal, 55679, 55733
-recovered pasa_asmbl_45206.p1, internal, 53600, 53758
-recovered pasa_asmbl_45206.p1, internal, 54119, 54294
-recovered pasa_asmbl_45206.p1, internal, 54870, 55041
-recovered pasa_asmbl_45206.p1, internal, 55446, 55537
Valid prediction for GlimmerHMM_glimmerT_11679-T1
Valid prediction for snap_scaffold_5-snap.205-T1
Valid prediction for pasa_asmbl_45182.p1
Valid prediction for CodingQuarry_transcript_51854-T1
Valid prediction for GeneMark_model.19438_t
Valid prediction for GeneMark_model.19454_t
Valid prediction for GlimmerHMM_glimmerT_11678-T1
Valid prediction for GeneMark_model.19470_t
Valid prediction for snap_scaffold_5-snap.197-T1
Valid prediction for Augustus_model.g7676.t1
Valid prediction for GlimmerHMM_glimmerT_11659-T1
Valid prediction for HiQ_model.g7683.t1
Valid prediction for Augustus_model.g7670.t1
Valid prediction for HiQ_model.g7672.t1
Valid prediction for snap_scaffold_5-snap.201-T1
Valid prediction for GlimmerHMM_glimmerT_11683-T1
Valid prediction for Augustus_model.g7689.t1
Valid prediction for GeneMark_model.19409_t
Couldn't classify 179049, 179121
Couldn't classify 184787, 184857
Sorry, prediction pasa_asmbl_45184.p1 fails validation.
(CGG)	 TA	179049-179121	GT	CGG
(TCA)	 AG	179376-179490	GT	CGG
(GTT)	 AG	179596-179820	GT	AGG
(GCT)	 AG	180644-180774	GT	AGG
(ATG)	 AG	180911-181058	GT	AGG
(GCT)	 AG	182150-182435	GT	AGG
(CTC)	 AG	183176-183274	GT	AGG
(GTT)	 AG	183919-184030	GT	AGG
(GTC)	 AG	184787-184857	CA	AAC
add_exon() Sorry, pasa_asmbl_45184.p1 180911-181058-initial-1 is invalid.
-recovered pasa_asmbl_45184.p1, initial, 180911, 181058
add_exon() Sorry, pasa_asmbl_45184.p1 180644-180774-terminal-2 is invalid.
-recovered pasa_asmbl_45184.p1, terminal, 180644, 180774
add_exon() Sorry, pasa_asmbl_45184.p1 183919-184030-terminal-3 is invalid.
-recovered pasa_asmbl_45184.p1, terminal, 183919, 184030
-recovered pasa_asmbl_45184.p1, internal, 179376, 179490
-recovered pasa_asmbl_45184.p1, internal, 179596, 179820
-recovered pasa_asmbl_45184.p1, internal, 180644, 180774
-recovered pasa_asmbl_45184.p1, internal, 180911, 181058
-recovered pasa_asmbl_45184.p1, internal, 182150, 182435
-recovered pasa_asmbl_45184.p1, internal, 183176, 183274
-recovered pasa_asmbl_45184.p1, internal, 183919, 184030
Valid prediction for pasa_asmbl_45198.p1
Valid prediction for snap_scaffold_5-snap.196-T1
Valid prediction for GeneMark_model.19429_t
Valid prediction for pasa_asmbl_45192.p2
Valid prediction for GlimmerHMM_glimmerT_11671-T1
Valid prediction for snap_scaffold_5-snap.226-T1
Valid prediction for CodingQuarry_transcript_51848-T1
Valid prediction for GeneMark_model.19411_t
Valid prediction for snap_scaffold_5-snap.212-T1
Valid prediction for snap_scaffold_5-snap.214-T1
Valid prediction for CodingQuarry_transcript_51856-T1
Valid prediction for GeneMark_model.19473_t
Valid prediction for snap_scaffold_5-snap.176-T1
Valid prediction for GlimmerHMM_glimmerT_11677-T1
Valid prediction for CodingQuarry_transcript_51853-T1
Valid prediction for snap_scaffold_5-snap.185-T1
Valid prediction for GeneMark_model.19431_t
Valid prediction for GeneMark_model.19422_t
Couldn't classify 16450, 16545
Sorry, prediction pasa_asmbl_45216.p1 fails validation.
(ATG)	 AA	14452-14553	GT	AGG
(CTT)	 AG	15104-15207	GT	AGG
(TAG)	 AG	15329-15406	GT	AGG
(GTT)	 AG	15790-15955	GT	GGG
(GCG)	 AG	16450-16545	GT	ATG
-recovered pasa_asmbl_45216.p1, initial, 14452, 14553
-recovered pasa_asmbl_45216.p1, internal, 15104, 15207
-recovered pasa_asmbl_45216.p1, internal, 15329, 15406
-recovered pasa_asmbl_45216.p1, internal, 15790, 15955
-recovered pasa_asmbl_45216.p1, internal, 16450, 16545
Valid prediction for GlimmerHMM_glimmerT_11666-T1
Valid prediction for GlimmerHMM_glimmerT_11672-T1
Valid prediction for GeneMark_model.19446_t
Valid prediction for snap_scaffold_5-snap.183-T1
Valid prediction for snap_scaffold_5-snap.187-T1
Valid prediction for CodingQuarry_transcript_51857-T1
Valid prediction for GlimmerHMM_glimmerT_11685-T1
Valid prediction for GeneMark_model.19415_t
Valid prediction for GlimmerHMM_glimmerT_11673-T1
Valid prediction for GlimmerHMM_glimmerT_11686-T1
Valid prediction for CodingQuarry_transcript_51851-T1
Valid prediction for pasa_asmbl_45204.p1
Valid prediction for GlimmerHMM_glimmerT_11674-T1
Valid prediction for GeneMark_model.19413_t
Valid prediction for snap_scaffold_5-snap.221-T1
Valid prediction for snap_scaffold_5-snap.207-T1
Valid prediction for GlimmerHMM_glimmerT_11670-T1
Valid prediction for GeneMark_model.19451_t
Valid prediction for Augustus_model.g7673.t1
Couldn't classify 18600, 18736
Sorry, prediction pasa_asmbl_45214.p1 fails validation.
(GAG)	 GG	18600-18736	GT	AGG
(CGC)	 AG	19484-19660	GT	AGG
(CGT)	 AG	20133-20295	TG	GAT
-recovered pasa_asmbl_45214.p1, terminal, 20133, 20295
-recovered pasa_asmbl_45214.p1, internal, 19484, 19660
Valid prediction for GeneMark_model.19442_t
Valid prediction for Augustus_model.g7684.t1
Valid prediction for Augustus_model.g7686.t1
Couldn't classify 191255, 191650
Sorry, prediction pasa_asmbl_45183.p1 fails validation.
(CCC)	 TC	191255-191650	GG	GGG
Valid prediction for snap_scaffold_5-snap.192-T1
Valid prediction for snap_scaffold_5-snap.182-T1
Valid prediction for GlimmerHMM_glimmerT_11680-T1
Valid prediction for HiQ_model.g7679.t1
Valid prediction for GeneMark_model.19427_t
Valid prediction for snap_scaffold_5-snap.190-T1
Valid prediction for pasa_asmbl_46327.p2
Valid prediction for GeneMark_model.19417_t
Valid prediction for GeneMark_model.19433_t
Valid prediction for GeneMark_model.19463_t
Valid prediction for pasa_asmbl_45186.p1
Valid prediction for snap_scaffold_5-snap.215-T1
Valid prediction for CodingQuarry_transcript_51858-T1
Valid prediction for snap_scaffold_5-snap.199-T1
Valid prediction for GeneMark_model.19448_t
Valid prediction for GeneMark_model.19466_t
Valid prediction for snap_scaffold_5-snap.209-T1
Sorry, intron length (5) is less than minimum required (10)
Valid prediction for Augustus_model.g7678.t1
Valid prediction for snap_scaffold_5-snap.195-T1
Valid prediction for GeneMark_model.19420_t
Valid prediction for HiQ_model.g7687.t1
Valid prediction for GeneMark_model.19458_t
Valid prediction for pasa_asmbl_45209.p1
Valid prediction for snap_scaffold_5-snap.210-T1
Valid prediction for GlimmerHMM_glimmerT_11684-T1
Valid prediction for GlimmerHMM_glimmerT_11682-T1
Valid prediction for snap_scaffold_5-snap.219-T1
Valid prediction for GeneMark_model.19450_t
Valid prediction for GeneMark_model.19469_t
Valid prediction for GeneMark_model.19444_t
Valid prediction for Augustus_model.g7675.t1
Valid prediction for CodingQuarry_transcript_51855-T1
Valid prediction for Augustus_model.g7688.t1
Valid prediction for snap_scaffold_5-snap.216-T1
Valid prediction for snap_scaffold_5-snap.218-T1
Valid prediction for Augustus_model.g7677.t1
Valid prediction for GeneMark_model.19467_t
Valid prediction for GlimmerHMM_glimmerT_11668-T1
Valid prediction for GeneMark_model.19474_t
Valid prediction for snap_scaffold_5-snap.203-T1
Valid prediction for Augustus_model.g7681.t1
Valid prediction for snap_scaffold_5-snap.223-T1
Valid prediction for Augustus_model.g7690.t1
Valid prediction for Augustus_model.g7680.t1
Valid prediction for GeneMark_model.19460_t
Valid prediction for GeneMark_model.19456_t

-loading the search evidence (protein and EST search results, strand: -)
-scoring exons (strand: -)Error with prediction: snap lend_intergenic: 15874, rend_intergenic: 2245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43729, rend_intergenic: 27252  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53245, rend_intergenic: 50243  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55418, rend_intergenic: 53428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62475, rend_intergenic: 57356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66330, rend_intergenic: 62482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71694, rend_intergenic: 68153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80692, rend_intergenic: 71795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85258, rend_intergenic: 81299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95980, rend_intergenic: 88851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117630, rend_intergenic: 111721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125420, rend_intergenic: 117679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130415, rend_intergenic: 125666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140561, rend_intergenic: 137373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147872, rend_intergenic: 141175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149558, rend_intergenic: 148116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171961, rend_intergenic: 159984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175674, rend_intergenic: 172034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182234, rend_intergenic: 176045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187206, rend_intergenic: 185665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199629, rend_intergenic: 187508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211514, rend_intergenic: 203714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229568, rend_intergenic: 223224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237274, rend_intergenic: 232260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245618, rend_intergenic: 241898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.

-building DP trellis

-building trellis in range 1 - 260069
-exon list size: 959


building trellis

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13.8    
13.9    
14.0    
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14.4    
14.5    
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14.8    
14.9    
15.0    
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15.7    
15.8    
15.9    
16.0    
16.1    
16.2    
16.3    
16.4    
16.5    
16.6    
16.8    
16.9    
17.0    
17.1    
17.2    
17.3    
17.4    
17.5    
17.6    
17.7    
17.8    
17.9    
18.0    
18.1    
18.2    
18.3    
18.4    
18.5    
18.6    
18.7    
18.8    
18.9    
19.0    
19.1    
19.3    
19.4    
19.5    
19.6    
19.7    
19.8    
19.9    
20.0    
20.1    
20.2    
20.3    
20.4    
20.5    
20.6    
20.7    
20.8    
20.9    
21.0    
21.1    
21.2    
21.3    
21.4    
21.5    
21.6    
21.7    
21.9    
22.0    
22.1    
22.2    
22.3    
22.4    
22.5    
22.6    
22.7    
22.8    
22.9    
23.0    
23.1    
23.2    
23.3    
23.4    
23.5    
23.6    
23.7    
23.8    
23.9    
24.0    
24.1    
24.2    
24.3    
24.5    
24.6    
24.7    
24.8    
24.9    
25.0    
25.1    
25.2    
25.3    
25.4    
25.5    
25.6    
25.7    
25.8    
25.9    
26.0    
26.1    
26.2    
26.3    
26.4    
26.5    
26.6    
26.7    
26.8    
27.0    
27.1    
27.2    
27.3    
27.4    
27.5    
27.6    
27.7    
27.8    
27.9    
28.0    
28.1    
28.2    
28.3    
28.4    
28.5    
28.6    
28.7    
28.8    
28.9    
29.0    
29.1    
29.2    
29.3    
29.4    
29.6    
29.7    
29.8    
29.9    
30.0    
30.1    
30.2    
30.3    
30.4    
30.5    
30.6    
30.7    
30.8    
30.9    
31.0    
31.1    
31.2    
31.3    
31.4    
31.5    
31.6    
31.7    
31.8    
31.9    
32.0    
32.2    
32.3    
32.4    
32.5    
32.6    
32.7    
32.8    
32.9    
33.0    
33.1    
33.2    
33.3    
33.4    
33.5    
33.6    
33.7    
33.8    
33.9    
34.0    
34.1    
34.2    
34.3    
34.4    
34.5    
34.7    
34.8    
34.9    
35.0    
35.1    
35.2    
35.3    
35.4    
35.5    
35.6    
35.7    
35.8    
35.9    
36.0    
36.1    
36.2    
36.3    
36.4    
36.5    
36.6    
36.7    
36.8    
36.9    
37.0    
37.1    
37.3    
37.4    
37.5    
37.6    
37.7    
37.8    
37.9    
38.0    
38.1    
38.2    
38.3    
38.4    
38.5    
38.6    
38.7    
38.8    
38.9    
39.0    
39.1    
39.2    
39.3    
39.4    
39.5    
39.6    
39.8    
39.9    
40.0    
40.1    
40.2    
40.3    
40.4    
40.5    
40.6    
40.7    
40.8    
40.9    
41.0    
41.1    
41.2    
41.3    
41.4    
41.5    
41.6    
41.7    
41.8    
41.9    
42.0    
42.1    
42.2    
42.4    
42.5    
42.6    
42.7    
42.8    
42.9    
43.0    
43.1    
43.2    
43.3    
43.4    
43.5    
43.6    
43.7    
43.8    
43.9    
44.0    
44.1    
44.2    
44.3    
44.4    
44.5    
44.6    
44.7    
44.8    
45.0    
45.1    
45.2    
45.3    
45.4    
45.5    
45.6    
45.7    
45.8    
45.9    
46.0    
46.1    
46.2    
46.3    
46.4    
46.5    
46.6    
46.7    
46.8    
46.9    
47.0    
47.1    
47.2    
47.3    
47.5    
47.6    
47.7    
47.8    
47.9    
48.0    
48.1    
48.2    
48.3    
48.4    
48.5    
48.6    
48.7    
48.8    
48.9    
49.0    
49.1    
49.2    
49.3    
49.4    
49.5    
49.6    
49.7    
49.8    
49.9    
50.1    
50.2    
50.3    
50.4    
50.5    
50.6    
50.7    
50.8    
50.9    
51.0    
51.1    
51.2    
51.3    
51.4    
51.5    
51.6    
51.7    
51.8    
51.9    
52.0    
52.1    
52.2    
52.3    
52.4    
52.5    
52.7    
52.8    
52.9    
53.0    
53.1    
53.2    
53.3    
53.4    
53.5    
53.6    
53.7    
53.8    
53.9    
54.0    
54.1    
54.2    
54.3    
54.4    
54.5    
54.6    
54.7    
54.8    
54.9    
55.0    
55.2    
55.3    
55.4    
55.5    
55.6    
55.7    
55.8    
55.9    
56.0    
56.1    
56.2    
56.3    
56.4    
56.5    
56.6    
56.7    
56.8    
56.9    
57.0    
57.1    
57.2    
57.3    
57.4    
57.5    
57.6    
57.8    
57.9    
58.0    
58.1    
58.2    
58.3    
58.4    
58.5    
58.6    
58.7    
58.8    
58.9    
59.0    
59.1    
59.2    
59.3    
59.4    
59.5    
59.6    
59.7    
59.8    
59.9    
60.0    
60.1    
60.2    
60.4    
60.5    
60.6    
60.7    
60.8    
60.9    
61.0    
61.1    
61.2    
61.3    
61.4    
61.5    
61.6    
61.7    
61.8    
61.9    
62.0    
62.1    
62.2    
62.3    
62.4    
62.5    
62.6    
62.7    
62.9    
63.0    
63.1    
63.2    
63.3    
63.4    
63.5    
63.6    
63.7    
63.8    
63.9    
64.0    
64.1    
64.2    
64.3    
64.4    
64.5    
64.6    
64.7    
64.8    
64.9    
65.0    
65.1    
65.2    
65.3    
65.5    
65.6    
65.7    
65.8    
65.9    
66.0    
66.1    
66.2    
66.3    
66.4    
66.5    
66.6    
66.7    
66.8    
66.9    
67.0    
67.1    
67.2    
67.3    
67.4    
67.5    
67.6    
67.7    
67.8    
68.0    
68.1    
68.2    
68.3    
68.4    
68.5    
68.6    
68.7    
68.8    
68.9    
69.0    
69.1    
69.2    
69.3    
69.4    
69.5    
69.6    
69.7    
69.8    
69.9    
70.0    
70.1    
70.2    
70.3    
70.4    
70.6    
70.7    
70.8    
70.9    
71.0    
71.1    
71.2    
71.3    
71.4    
71.5    
71.6    
71.7    
71.8    
71.9    
72.0    
72.1    
72.2    
72.3    
72.4    
72.5    
72.6    
72.7    
72.8    
72.9    
73.0    
73.2    
73.3    
73.4    
73.5    
73.6    
73.7    
73.8    
73.9    
74.0    
74.1    
74.2    
74.3    
74.4    
74.5    
74.6    
74.7    
74.8    
74.9    
75.0    
75.1    
75.2    
75.3    
75.4    
75.5    
75.7    
75.8    
75.9    
76.0    
76.1    
76.2    
76.3    
76.4    
76.5    
76.6    
76.7    
76.8    
76.9    
77.0    
77.1    
77.2    
77.3    
77.4    
77.5    
77.6    
77.7    
77.8    
77.9    
78.0    
78.1    
78.3    
78.4    
78.5    
78.6    
78.7    
78.8    
78.9    
79.0    
79.1    
79.2    
79.3    
79.4    
79.5    
79.6    
79.7    
79.8    
79.9    
80.0    
80.1    
80.2    
80.3    
80.4    
80.5    
80.6    
80.7    
80.9    
81.0    
81.1    
81.2    
81.3    
81.4    
81.5    
81.6    
81.7    
81.8    
81.9    
82.0    
82.1    
82.2    
82.3    
82.4    
82.5    
82.6    
82.7    
82.8    
82.9    
83.0    
83.1    
83.2    
83.4    
83.5    
83.6    
83.7    
83.8    
83.9    
84.0    
84.1    
84.2    
84.3    
84.4    
84.5    
84.6    
84.7    
84.8    
84.9    
85.0    
85.1    
85.2    
85.3    
85.4    
85.5    
85.6    
85.7    
85.8    
86.0    
86.1    
86.2    
86.3    
86.4    
86.5    
86.6    
86.7    
86.8    
86.9    
87.0    
87.1    
87.2    
87.3    
87.4    
87.5    
87.6    
87.7    
87.8    
87.9    
88.0    
88.1    
88.2    
88.3    
88.4    
88.6    
88.7    
88.8    
88.9    
89.0    
89.1    
89.2    
89.3    
89.4    
89.5    
89.6    
89.7    
89.8    
89.9    
90.0    
90.1    
90.2    
90.3    
90.4    
90.5    
90.6    
90.7    
90.8    
90.9    
91.1    
91.2    
91.3    
91.4    
91.5    
91.6    
91.7    
91.8    
91.9    
92.0    
92.1    
92.2    
92.3    
92.4    
92.5    
92.6    
92.7    
92.8    
92.9    
93.0    
93.1    
93.2    
93.3    
93.4    
93.5    
93.7    
93.8    
93.9    
94.0    
94.1    
94.2    
94.3    
94.4    
94.5    
94.6    
94.7    
94.8    
94.9    
95.0    
95.1    
95.2    
95.3    
95.4    
95.5    
95.6    
95.7    
95.8    
95.9    
96.0    
96.1    
96.3    
96.4    
96.5    
96.6    
96.7    
96.8    
96.9    
97.0    
97.1    
97.2    
97.3    
97.4    
97.5    
97.6    
97.7    
97.8    
97.9    
98.0    
98.1    
98.2    
98.3    
98.4    
98.5    
98.6    
98.8    
98.9    
99.0    
99.1    
99.2    
99.3    
99.4    
99.5    
99.6    
99.7    
99.8    
99.9    
-found 43 predictions from path traversal
Error with prediction: snap lend_intergenic: 15874, rend_intergenic: 2245  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 43729, rend_intergenic: 27252  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 53245, rend_intergenic: 50243  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 55418, rend_intergenic: 53428  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 62475, rend_intergenic: 57356  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 66330, rend_intergenic: 62482  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 71694, rend_intergenic: 68153  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 80692, rend_intergenic: 71795  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 85258, rend_intergenic: 81299  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 95980, rend_intergenic: 88851  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 117630, rend_intergenic: 111721  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 125420, rend_intergenic: 117679  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 130415, rend_intergenic: 125666  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 140561, rend_intergenic: 137373  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 147872, rend_intergenic: 141175  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 149558, rend_intergenic: 148116  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 171961, rend_intergenic: 159984  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 175674, rend_intergenic: 172034  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 182234, rend_intergenic: 176045  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 187206, rend_intergenic: 185665  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 199629, rend_intergenic: 187508  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 211514, rend_intergenic: 203714  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 229568, rend_intergenic: 223224  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 237274, rend_intergenic: 232260  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
Error with prediction: snap lend_intergenic: 245618, rend_intergenic: 241898  at /venv/opt/evidencemodeler-1.1.1/evidence_modeler.pl line 3218.
GOT 5prime partial gene.

-reporting highest scoring path thru the trellis.
-found 32 predictions persist after filtering for low support